Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
RP229 | RP335 | gene:17555310 | gene:17555415 | HISTIDINE KINASE SENSOR PROTEIN (barA). | Unknown. | 0.758 |
RP229 | RP426 | gene:17555310 | gene:17555506 | HISTIDINE KINASE SENSOR PROTEIN (barA). | OSMOLARITY SENSOR PROTEIN ENVZ (envZ). | 0.705 |
RP229 | RP465 | gene:17555310 | gene:17555545 | HISTIDINE KINASE SENSOR PROTEIN (barA). | ALKALINE PHOSPHATASE SYNTHESIS SENSOR PROTEIN PHOR (phoR). | 0.759 |
RP229 | RP495 | gene:17555310 | gene:17555575 | HISTIDINE KINASE SENSOR PROTEIN (barA). | Unknown; Belongs to the glutamine synthetase family. | 0.470 |
RP229 | RP562 | gene:17555310 | gene:17555642 | HISTIDINE KINASE SENSOR PROTEIN (barA). | NITROGEN ASSIMILATION REGULATORY PROTEIN NTRX (ntrX); Member of the two-component regulatory system RP562/RP614. | 0.768 |
RP229 | RP614 | gene:17555310 | gene:17555693 | HISTIDINE KINASE SENSOR PROTEIN (barA). | NITROGEN REGULATION PROTEIN NTRY (ntrY); Member of the two-component regulatory system RP614/RP562. | 0.442 |
RP335 | RP229 | gene:17555415 | gene:17555310 | Unknown. | HISTIDINE KINASE SENSOR PROTEIN (barA). | 0.758 |
RP335 | RP426 | gene:17555415 | gene:17555506 | Unknown. | OSMOLARITY SENSOR PROTEIN ENVZ (envZ). | 0.725 |
RP335 | RP465 | gene:17555415 | gene:17555545 | Unknown. | ALKALINE PHOSPHATASE SYNTHESIS SENSOR PROTEIN PHOR (phoR). | 0.857 |
RP335 | RP562 | gene:17555415 | gene:17555642 | Unknown. | NITROGEN ASSIMILATION REGULATORY PROTEIN NTRX (ntrX); Member of the two-component regulatory system RP562/RP614. | 0.682 |
RP335 | RP563 | gene:17555415 | gene:17555643 | Unknown. | Unknown. | 0.856 |
RP335 | RP858 | gene:17555415 | gene:17555927 | Unknown. | RNA POLYMERASE SIGMA FACTOR RPOD (rpoD); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.718 |
RP426 | RP229 | gene:17555506 | gene:17555310 | OSMOLARITY SENSOR PROTEIN ENVZ (envZ). | HISTIDINE KINASE SENSOR PROTEIN (barA). | 0.705 |
RP426 | RP335 | gene:17555506 | gene:17555415 | OSMOLARITY SENSOR PROTEIN ENVZ (envZ). | Unknown. | 0.725 |
RP426 | RP465 | gene:17555506 | gene:17555545 | OSMOLARITY SENSOR PROTEIN ENVZ (envZ). | ALKALINE PHOSPHATASE SYNTHESIS SENSOR PROTEIN PHOR (phoR). | 0.740 |
RP426 | RP562 | gene:17555506 | gene:17555642 | OSMOLARITY SENSOR PROTEIN ENVZ (envZ). | NITROGEN ASSIMILATION REGULATORY PROTEIN NTRX (ntrX); Member of the two-component regulatory system RP562/RP614. | 0.636 |
RP465 | RP229 | gene:17555545 | gene:17555310 | ALKALINE PHOSPHATASE SYNTHESIS SENSOR PROTEIN PHOR (phoR). | HISTIDINE KINASE SENSOR PROTEIN (barA). | 0.759 |
RP465 | RP335 | gene:17555545 | gene:17555415 | ALKALINE PHOSPHATASE SYNTHESIS SENSOR PROTEIN PHOR (phoR). | Unknown. | 0.857 |
RP465 | RP426 | gene:17555545 | gene:17555506 | ALKALINE PHOSPHATASE SYNTHESIS SENSOR PROTEIN PHOR (phoR). | OSMOLARITY SENSOR PROTEIN ENVZ (envZ). | 0.740 |
RP465 | RP495 | gene:17555545 | gene:17555575 | ALKALINE PHOSPHATASE SYNTHESIS SENSOR PROTEIN PHOR (phoR). | Unknown; Belongs to the glutamine synthetase family. | 0.553 |
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