RP833 protein (Rickettsia prowazekii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RP833

17 KD SURFACE ANTIGEN PRECURSOR (omp). (159 aa)

Predicted Functional Partners:

RP832

0.612

RP199

0.557

RP231

0.557

RP317

0.557

RP144

0.556

RP532

0.556

RP723

0.556

RP853

0.556

RP834

0.541

RP831

0.492

Your Current Organism:

Rickettsia prowazekii

NCBI taxonomy Id: 272947
Other names: R. prowazekii str. Madrid E, Rickettsia prowazekii str. Madrid E, Rickettsia prowazekii strain Madrid E

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RP144	RP199	gene:17555227	gene:17555280	Unknown.	ADRENODOXIN PRECURSOR (adx1); Ferredoxin are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions; Belongs to the adrenodoxin/putidaredoxin family.	0.587
RP144	RP231	gene:17555227	gene:17555312	Unknown.	Unknown.	0.587
RP144	RP317	gene:17555227	gene:17555397	Unknown.	PROTEIN KINASE C INHIBITOR 1 (pkcI).	0.587
RP144	RP532	gene:17555227	gene:17555612	Unknown.	Unknown.	0.587
RP144	RP723	gene:17555227	gene:17555795	Unknown.	Unknown.	0.587
RP144	RP833	gene:17555227	gene:17555902	Unknown.	17 KD SURFACE ANTIGEN PRECURSOR (omp).	0.556
RP144	RP853	gene:17555227	gene:17555922	Unknown.	Unknown.	0.587
RP199	RP144	gene:17555280	gene:17555227	ADRENODOXIN PRECURSOR (adx1); Ferredoxin are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions; Belongs to the adrenodoxin/putidaredoxin family.	Unknown.	0.587
RP199	RP231	gene:17555280	gene:17555312	ADRENODOXIN PRECURSOR (adx1); Ferredoxin are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions; Belongs to the adrenodoxin/putidaredoxin family.	Unknown.	0.590
RP199	RP317	gene:17555280	gene:17555397	ADRENODOXIN PRECURSOR (adx1); Ferredoxin are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions; Belongs to the adrenodoxin/putidaredoxin family.	PROTEIN KINASE C INHIBITOR 1 (pkcI).	0.617
RP199	RP532	gene:17555280	gene:17555612	ADRENODOXIN PRECURSOR (adx1); Ferredoxin are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions; Belongs to the adrenodoxin/putidaredoxin family.	Unknown.	0.587
RP199	RP723	gene:17555280	gene:17555795	ADRENODOXIN PRECURSOR (adx1); Ferredoxin are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions; Belongs to the adrenodoxin/putidaredoxin family.	Unknown.	0.587
RP199	RP833	gene:17555280	gene:17555902	ADRENODOXIN PRECURSOR (adx1); Ferredoxin are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions; Belongs to the adrenodoxin/putidaredoxin family.	17 KD SURFACE ANTIGEN PRECURSOR (omp).	0.557
RP199	RP853	gene:17555280	gene:17555922	ADRENODOXIN PRECURSOR (adx1); Ferredoxin are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions; Belongs to the adrenodoxin/putidaredoxin family.	Unknown.	0.587
RP231	RP144	gene:17555312	gene:17555227	Unknown.	Unknown.	0.587
RP231	RP199	gene:17555312	gene:17555280	Unknown.	ADRENODOXIN PRECURSOR (adx1); Ferredoxin are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions; Belongs to the adrenodoxin/putidaredoxin family.	0.590
RP231	RP317	gene:17555312	gene:17555397	Unknown.	PROTEIN KINASE C INHIBITOR 1 (pkcI).	0.587
RP231	RP532	gene:17555312	gene:17555612	Unknown.	Unknown.	0.587
RP231	RP723	gene:17555312	gene:17555795	Unknown.	Unknown.	0.587
RP231	RP833	gene:17555312	gene:17555902	Unknown.	17 KD SURFACE ANTIGEN PRECURSOR (omp).	0.557