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rpoD protein (Sulfolobus solfataricus) - STRING interaction network
"rpoD" - DNA-directed RNA polymerase subunit D in Sulfolobus solfataricus
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
rpoDDNA-directed RNA polymerase subunit D; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (265 aa)    
Predicted Functional Partners:
rps11AB
30S ribosomal protein S11; Located on the platform of the 30S subunit (132 aa)
 
 
  0.999
rps4AB
30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit (181 aa)
 
 
  0.999
rpl5AB
50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. May contact the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs (182 aa)
 
 
  0.999
rpoN
DNA-directed RNA polymerase subunit N; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (66 aa)
 
 
  0.999
rps13AB
30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement (165 aa)
 
 
  0.999
rps8AB
30S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit (133 aa)
 
 
  0.999
rps5AB
30S ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy (217 aa)
 
 
  0.998
rpS12AB
30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits (150 aa)
 
 
  0.998
rpoH
DNA-directed RNA polymerase subunit H; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (84 aa)
 
 
  0.998
rps3AB
30S ribosomal protein S3; Binds the lower part of the 30S subunit head (229 aa)
 
 
  0.998
Your Current Organism:
Sulfolobus solfataricus
NCBI taxonomy Id: 273057
Other names: S. solfataricus P2, Sulfolobus solfataricus, Sulfolobus solfataricus P2, Sulfolobus solfataricus str. P2, Sulfolobus solfataricus strain P2
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