Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
aspB-1 | aspB-3 | SSO0104 | SSO1177 | Aspartate aminotransferase (aspB-1); Amino Acid Biosynthesis, Aspartate. | Aspartate aminotransferase (aspB-3); Amino Acid Biosynthesis, Aspartate. | 0.407 |
aspB-1 | cinA | SSO0104 | SSO0103 | Aspartate aminotransferase (aspB-1); Amino Acid Biosynthesis, Aspartate. | Competence damage protein (cinA); Regulation; Belongs to the CinA family. | 0.603 |
aspB-1 | hdrA | SSO0104 | SSO1131 | Aspartate aminotransferase (aspB-1); Amino Acid Biosynthesis, Aspartate. | Heterodisulfide reductase, subunit A (hdrA); Energy Metabolism. | 0.461 |
aspB-1 | rimK-1 | SSO0104 | SSO0159 | Aspartate aminotransferase (aspB-1); Amino Acid Biosynthesis, Aspartate. | Ribosomal protein S6 modification protein (rimK-1); Catalyzes the ATP-dependent formation of a covalent bond between the amino group of alpha-aminoadipate (AAA) and the gamma- carboxyl group of the C-terminal glutamate residue in LysW. Belongs to the RimK family. LysX subfamily. | 0.900 |
aspB-3 | aspB-1 | SSO1177 | SSO0104 | Aspartate aminotransferase (aspB-3); Amino Acid Biosynthesis, Aspartate. | Aspartate aminotransferase (aspB-1); Amino Acid Biosynthesis, Aspartate. | 0.407 |
cinA | aspB-1 | SSO0103 | SSO0104 | Competence damage protein (cinA); Regulation; Belongs to the CinA family. | Aspartate aminotransferase (aspB-1); Amino Acid Biosynthesis, Aspartate. | 0.603 |
hdrA | aspB-1 | SSO1131 | SSO0104 | Heterodisulfide reductase, subunit A (hdrA); Energy Metabolism. | Aspartate aminotransferase (aspB-1); Amino Acid Biosynthesis, Aspartate. | 0.461 |
rimK-1 | aspB-1 | SSO0159 | SSO0104 | Ribosomal protein S6 modification protein (rimK-1); Catalyzes the ATP-dependent formation of a covalent bond between the amino group of alpha-aminoadipate (AAA) and the gamma- carboxyl group of the C-terminal glutamate residue in LysW. Belongs to the RimK family. LysX subfamily. | Aspartate aminotransferase (aspB-1); Amino Acid Biosynthesis, Aspartate. | 0.900 |