Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SSO1521 | SSO2661 | SSO1521 | SSO2661 | Hypothetical protein. | Hypothetical protein; Weak similarity with proline permeases. | 0.820 |
SSO1521 | cobA | SSO1521 | SSO2435 | Hypothetical protein. | Uroporphyrinogen III methylase (cobA); Cofactor Biosynthesis. | 0.542 |
SSO1521 | cysG | SSO1521 | SSO2908 | Hypothetical protein. | Uroporphyrin-III C-methyltransferase (siroheme synthase) (cysG); Cofactor Biosynthesis; Belongs to the precorrin methyltransferase family. | 0.481 |
SSO1521 | dcD-1 | SSO1521 | SSO0190 | Hypothetical protein. | Deoxycytidine triphosphate deaminase (dcD-1); Catalyzes the deamination of dCTP to dUTP. | 0.541 |
SSO1521 | nrd | SSO1521 | SSO0929 | Hypothetical protein. | Ribonucleotide reductase (nrd); Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. | 0.541 |
SSO1521 | nrdB | SSO1521 | SSO2498 | Hypothetical protein. | Ribonucleotide reductase small subunit, probable (nrdB); Purines. | 0.514 |
SSO2661 | SSO1521 | SSO2661 | SSO1521 | Hypothetical protein; Weak similarity with proline permeases. | Hypothetical protein. | 0.820 |
SSO2661 | cobA | SSO2661 | SSO2435 | Hypothetical protein; Weak similarity with proline permeases. | Uroporphyrinogen III methylase (cobA); Cofactor Biosynthesis. | 0.542 |
SSO2661 | cysG | SSO2661 | SSO2908 | Hypothetical protein; Weak similarity with proline permeases. | Uroporphyrin-III C-methyltransferase (siroheme synthase) (cysG); Cofactor Biosynthesis; Belongs to the precorrin methyltransferase family. | 0.481 |
SSO2661 | dcD-1 | SSO2661 | SSO0190 | Hypothetical protein; Weak similarity with proline permeases. | Deoxycytidine triphosphate deaminase (dcD-1); Catalyzes the deamination of dCTP to dUTP. | 0.541 |
SSO2661 | nrd | SSO2661 | SSO0929 | Hypothetical protein; Weak similarity with proline permeases. | Ribonucleotide reductase (nrd); Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. | 0.541 |
SSO2661 | nrdB | SSO2661 | SSO2498 | Hypothetical protein; Weak similarity with proline permeases. | Ribonucleotide reductase small subunit, probable (nrdB); Purines. | 0.514 |
cobA | SSO1521 | SSO2435 | SSO1521 | Uroporphyrinogen III methylase (cobA); Cofactor Biosynthesis. | Hypothetical protein. | 0.542 |
cobA | SSO2661 | SSO2435 | SSO2661 | Uroporphyrinogen III methylase (cobA); Cofactor Biosynthesis. | Hypothetical protein; Weak similarity with proline permeases. | 0.542 |
cobA | cysG | SSO2435 | SSO2908 | Uroporphyrinogen III methylase (cobA); Cofactor Biosynthesis. | Uroporphyrin-III C-methyltransferase (siroheme synthase) (cysG); Cofactor Biosynthesis; Belongs to the precorrin methyltransferase family. | 0.904 |
cobA | dcD-1 | SSO2435 | SSO0190 | Uroporphyrinogen III methylase (cobA); Cofactor Biosynthesis. | Deoxycytidine triphosphate deaminase (dcD-1); Catalyzes the deamination of dCTP to dUTP. | 0.570 |
cobA | nrd | SSO2435 | SSO0929 | Uroporphyrinogen III methylase (cobA); Cofactor Biosynthesis. | Ribonucleotide reductase (nrd); Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. | 0.548 |
cobA | nrdB | SSO2435 | SSO2498 | Uroporphyrinogen III methylase (cobA); Cofactor Biosynthesis. | Ribonucleotide reductase small subunit, probable (nrdB); Purines. | 0.558 |
cysG | SSO1521 | SSO2908 | SSO1521 | Uroporphyrin-III C-methyltransferase (siroheme synthase) (cysG); Cofactor Biosynthesis; Belongs to the precorrin methyltransferase family. | Hypothetical protein. | 0.481 |
cysG | SSO2661 | SSO2908 | SSO2661 | Uroporphyrin-III C-methyltransferase (siroheme synthase) (cysG); Cofactor Biosynthesis; Belongs to the precorrin methyltransferase family. | Hypothetical protein; Weak similarity with proline permeases. | 0.481 |
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