Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SSO0251 | SSO0427 | SSO0251 | SSO0427 | Hypothetical protein. | Protein L-isoaspartate methyltransferase; Protein modification. | 0.712 |
SSO0251 | SSO0625 | SSO0251 | SSO0625 | Hypothetical protein. | GTP-binding protein; Uncategorized. | 0.980 |
SSO0251 | SSO0731 | SSO0251 | SSO0731 | Hypothetical protein. | Hypothetical protein; Probably involved in the biogenesis of the ribosome. | 0.973 |
SSO0251 | SSO1044 | SSO0251 | SSO1044 | Hypothetical protein. | Conserved hypothetical protein. | 0.715 |
SSO0251 | SSO2383 | SSO0251 | SSO2383 | Hypothetical protein. | Conserved hypothetical protein; High hit: PAB1716. | 0.796 |
SSO0251 | rpoL | SSO0251 | SSO5577 | Hypothetical protein. | DNA-directed RNA polymerase, subunit L (rpoL); DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.884 |
SSO0251 | rtcA | SSO0251 | SSO2446 | Hypothetical protein. | RNA 3' terminal phosphate cyclase (RNA 3' phosphate cyclase) (RNA cyclase) (rtcA); Catalyzes the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps: (A) adenylation of the enzyme by ATP; (B) transfer of adenylate to an RNA-N3'P to produce RNA-N3'PP5'A; (C) and attack of the adjacent 2'-hydroxyl on the 3'-phosphorus in the diester linkage to produce the cyclic end product. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing (By similarity). | 0.934 |
SSO0251 | trm1 | SSO0251 | SSO0943 | Hypothetical protein. | N2,N2 dimethylguanosine tRNA methyltransferase; Dimethylates a single guanine residue at position 26 of a number of tRNAs using S-adenosyl-L-methionine as donor of the methyl groups; Belongs to the class I-like SAM-binding methyltransferase superfamily. Trm1 family. | 0.601 |
SSO0427 | SSO0251 | SSO0427 | SSO0251 | Protein L-isoaspartate methyltransferase; Protein modification. | Hypothetical protein. | 0.712 |
SSO0427 | SSO0625 | SSO0427 | SSO0625 | Protein L-isoaspartate methyltransferase; Protein modification. | GTP-binding protein; Uncategorized. | 0.768 |
SSO0427 | SSO0731 | SSO0427 | SSO0731 | Protein L-isoaspartate methyltransferase; Protein modification. | Hypothetical protein; Probably involved in the biogenesis of the ribosome. | 0.467 |
SSO0427 | SSO1044 | SSO0427 | SSO1044 | Protein L-isoaspartate methyltransferase; Protein modification. | Conserved hypothetical protein. | 0.752 |
SSO0427 | SSO2383 | SSO0427 | SSO2383 | Protein L-isoaspartate methyltransferase; Protein modification. | Conserved hypothetical protein; High hit: PAB1716. | 0.424 |
SSO0427 | rnz | SSO0427 | SSO1043 | Protein L-isoaspartate methyltransferase; Protein modification. | Conserved hypothetical protein; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family. | 0.486 |
SSO0427 | rpoL | SSO0427 | SSO5577 | Protein L-isoaspartate methyltransferase; Protein modification. | DNA-directed RNA polymerase, subunit L (rpoL); DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.420 |
SSO0427 | rtcA | SSO0427 | SSO2446 | Protein L-isoaspartate methyltransferase; Protein modification. | RNA 3' terminal phosphate cyclase (RNA 3' phosphate cyclase) (RNA cyclase) (rtcA); Catalyzes the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps: (A) adenylation of the enzyme by ATP; (B) transfer of adenylate to an RNA-N3'P to produce RNA-N3'PP5'A; (C) and attack of the adjacent 2'-hydroxyl on the 3'-phosphorus in the diester linkage to produce the cyclic end product. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing (By similarity). | 0.853 |
SSO0427 | trm1 | SSO0427 | SSO0943 | Protein L-isoaspartate methyltransferase; Protein modification. | N2,N2 dimethylguanosine tRNA methyltransferase; Dimethylates a single guanine residue at position 26 of a number of tRNAs using S-adenosyl-L-methionine as donor of the methyl groups; Belongs to the class I-like SAM-binding methyltransferase superfamily. Trm1 family. | 0.540 |
SSO0625 | SSO0251 | SSO0625 | SSO0251 | GTP-binding protein; Uncategorized. | Hypothetical protein. | 0.980 |
SSO0625 | SSO0427 | SSO0625 | SSO0427 | GTP-binding protein; Uncategorized. | Protein L-isoaspartate methyltransferase; Protein modification. | 0.768 |
SSO0625 | SSO0731 | SSO0625 | SSO0731 | GTP-binding protein; Uncategorized. | Hypothetical protein; Probably involved in the biogenesis of the ribosome. | 0.967 |
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