STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SSO1270Hypothetical protein. (464 aa)    
Predicted Functional Partners:
SSO1269
Hypothetical protein.
   
 
 0.859
alaS-like2
Alanyl-tRNA synthetase truncated homolog (alaS-like2); Similar to other truncated alanine--tRNA ligase homologs found in Pyrococcus (PAB1440 and PH0574); Translation, Aminoacyl tRNA synthetases.
       0.773
glmS-2
Glutamine-fructose-6-phosphate transaminase (isomerizing) (glmS-2); Amino Acid Biosynthesis, Glutamate.
       0.664
csl4
Conserved hypothetical protein; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Helpful for the interaction of the exosome with A-poor RNAs.
      
 0.638
YchF
GTP binding protein; Uncategorized.
     
 0.628
SSO1272
Conserved hypothetical protein; Some similarity with BH3573.
       0.564
SSO1265
Hypothetical protein.
       0.558
SSO1266
ABC transporter, ATP binding protein; Transport.
       0.558
rph
Ribonuclease PH (rph); Catalytic component of the exosome, which is a complex involved in RNA degradation. Has 3'->5' exoribonuclease activity. Can also synthesize heteropolymeric RNA-tails. Binds RNA. Belongs to the RNase PH family. Rrp41 subfamily.
      
 0.542
rrp42
Conserved hypothetical protein; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Contributes to the structuring of the Rrp41 active site; Belongs to the RNase PH family. Rrp42 subfamily.
      
 0.540
Your Current Organism:
Saccharolobus solfataricus
NCBI taxonomy Id: 273057
Other names: S. solfataricus P2, Saccharolobus solfataricus P2, Sulfolobus solfataricus P2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.