Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ST0476 | ST0478 | STK_04760 | STK_04780 | Phosphatidylethanolamine-binding protein. | Amidase. | 0.674 |
ST0476 | ST0479 | STK_04760 | STK_04790 | Phosphatidylethanolamine-binding protein. | Hypothetical protein. | 0.593 |
ST0476 | ST1996 | STK_04760 | STK_19960 | Phosphatidylethanolamine-binding protein. | Putative protein kinase. | 0.638 |
ST0476 | psmB-2 | STK_04760 | STK_04770 | Phosphatidylethanolamine-binding protein. | Proteasome beta subunit; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. | 0.753 |
ST0476 | rfcL | STK_04760 | STK_04730 | Phosphatidylethanolamine-binding protein. | Replication factor C large subunit; Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA; Belongs to the activator 1 small subunits family. RfcL subfamily. | 0.714 |
ST0476 | rfcS | STK_04760 | STK_04750 | Phosphatidylethanolamine-binding protein. | Replication factor C small subunit; Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA; Belongs to the activator 1 small subunits family. RfcS subfamily. | 0.714 |
ST0478 | ST0476 | STK_04780 | STK_04760 | Amidase. | Phosphatidylethanolamine-binding protein. | 0.674 |
ST0478 | ST0479 | STK_04780 | STK_04790 | Amidase. | Hypothetical protein. | 0.755 |
ST0478 | psmB-2 | STK_04780 | STK_04770 | Amidase. | Proteasome beta subunit; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. | 0.745 |
ST0478 | rfcL | STK_04780 | STK_04730 | Amidase. | Replication factor C large subunit; Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA; Belongs to the activator 1 small subunits family. RfcL subfamily. | 0.572 |
ST0478 | rfcS | STK_04780 | STK_04750 | Amidase. | Replication factor C small subunit; Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA; Belongs to the activator 1 small subunits family. RfcS subfamily. | 0.624 |
ST0479 | ST0476 | STK_04790 | STK_04760 | Hypothetical protein. | Phosphatidylethanolamine-binding protein. | 0.593 |
ST0479 | ST0478 | STK_04790 | STK_04780 | Hypothetical protein. | Amidase. | 0.755 |
ST0479 | psmB-2 | STK_04790 | STK_04770 | Hypothetical protein. | Proteasome beta subunit; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. | 0.680 |
ST0479 | rfcL | STK_04790 | STK_04730 | Hypothetical protein. | Replication factor C large subunit; Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA; Belongs to the activator 1 small subunits family. RfcL subfamily. | 0.572 |
ST0479 | rfcS | STK_04790 | STK_04750 | Hypothetical protein. | Replication factor C small subunit; Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA; Belongs to the activator 1 small subunits family. RfcS subfamily. | 0.493 |
ST0479 | rpl40e | STK_04790 | STK_02035 | Hypothetical protein. | 50S ribosomal protein L40e; Belongs to the eukaryotic ribosomal protein eL40 family. | 0.416 |
ST1996 | ST0476 | STK_19960 | STK_04760 | Putative protein kinase. | Phosphatidylethanolamine-binding protein. | 0.638 |
ST1996 | pan | STK_19960 | STK_03300 | Putative protein kinase. | Proteasome-activating nucleotidase; ATPase which is responsible for recognizing, binding, unfolding and translocation of substrate proteins into the archaeal 20S proteasome core particle. Is essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C- termini of the proteasomal ATPase function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis. Unfolding activity requires energy from ATP hydrolysis, whereas ATP binding alone promotes ATPase- [...] | 0.816 |
ST1996 | psmA | STK_19960 | STK_04460 | Putative protein kinase. | Proteasome alpha subunit; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. | 0.681 |
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