Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ST0312 | ST0329 | STK_03120 | STK_03290 | Hypothetical protein. | Hypothetical protein. | 0.687 |
ST0312 | STK_03330 | STK_03120 | STK_03330 | Hypothetical protein. | tRNA (Cm56) 2'-O-methyltransferase; Specifically catalyzes the AdoMet-dependent 2'-O-ribose methylation of cytidine at position 56 in tRNAs; Belongs to the aTrm56 family. | 0.679 |
ST0312 | STK_03780 | STK_03120 | STK_03780 | Hypothetical protein. | Hypothetical protein; Catalyzes the GTP-dependent phosphorylation of the 3'- hydroxyl group of dephosphocoenzyme A to form coenzyme A (CoA). | 0.721 |
ST0329 | ST0312 | STK_03290 | STK_03120 | Hypothetical protein. | Hypothetical protein. | 0.687 |
ST0329 | ST0331 | STK_03290 | STK_03310 | Hypothetical protein. | Putative Xre family DNA-binding protein. | 0.812 |
ST0329 | ST0335 | STK_03290 | STK_03350 | Hypothetical protein. | DNA-cytosine methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. | 0.589 |
ST0329 | ST0336 | STK_03290 | STK_03360 | Hypothetical protein. | Hypothetical protein. | 0.573 |
ST0329 | STK_03330 | STK_03290 | STK_03330 | Hypothetical protein. | tRNA (Cm56) 2'-O-methyltransferase; Specifically catalyzes the AdoMet-dependent 2'-O-ribose methylation of cytidine at position 56 in tRNAs; Belongs to the aTrm56 family. | 0.888 |
ST0329 | STK_03780 | STK_03290 | STK_03780 | Hypothetical protein. | Hypothetical protein; Catalyzes the GTP-dependent phosphorylation of the 3'- hydroxyl group of dephosphocoenzyme A to form coenzyme A (CoA). | 0.702 |
ST0329 | hflX | STK_03290 | STK_03320 | Hypothetical protein. | GTPase HflX. | 0.718 |
ST0329 | nac | STK_03290 | STK_21890 | Hypothetical protein. | Nascent polypeptide-associated complex protein; Contacts the emerging nascent chain on the ribosome. Belongs to the NAC-alpha family. | 0.690 |
ST0329 | pan | STK_03290 | STK_03300 | Hypothetical protein. | Proteasome-activating nucleotidase; ATPase which is responsible for recognizing, binding, unfolding and translocation of substrate proteins into the archaeal 20S proteasome core particle. Is essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C- termini of the proteasomal ATPase function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis. Unfolding activity requires energy from ATP hydrolysis, whereas ATP binding alone promotes ATPase- [...] | 0.854 |
ST0329 | tfe | STK_03290 | STK_03340 | Hypothetical protein. | Transcription factor E; Transcription factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Facilitates transcription initiation by enhancing TATA-box recognition by TATA-box-binding protein (Tbp), and transcription factor B (Tfb) and RNA polymerase recruitment. Not absolutely required for transcription in vitro, but particularly important in cases where Tbp or Tfb function is not optimal. It dynamically alters the nucleic acid-binding properties of RNA polymerases by stabilizing the initiation complex and destabilizing elongation complexes. Seems [...] | 0.755 |
ST0331 | ST0329 | STK_03310 | STK_03290 | Putative Xre family DNA-binding protein. | Hypothetical protein. | 0.812 |
ST0331 | ST0335 | STK_03310 | STK_03350 | Putative Xre family DNA-binding protein. | DNA-cytosine methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. | 0.841 |
ST0331 | ST0336 | STK_03310 | STK_03360 | Putative Xre family DNA-binding protein. | Hypothetical protein. | 0.815 |
ST0331 | STK_03330 | STK_03310 | STK_03330 | Putative Xre family DNA-binding protein. | tRNA (Cm56) 2'-O-methyltransferase; Specifically catalyzes the AdoMet-dependent 2'-O-ribose methylation of cytidine at position 56 in tRNAs; Belongs to the aTrm56 family. | 0.867 |
ST0331 | hflX | STK_03310 | STK_03320 | Putative Xre family DNA-binding protein. | GTPase HflX. | 0.888 |
ST0331 | nac | STK_03310 | STK_21890 | Putative Xre family DNA-binding protein. | Nascent polypeptide-associated complex protein; Contacts the emerging nascent chain on the ribosome. Belongs to the NAC-alpha family. | 0.744 |
ST0331 | pan | STK_03310 | STK_03300 | Putative Xre family DNA-binding protein. | Proteasome-activating nucleotidase; ATPase which is responsible for recognizing, binding, unfolding and translocation of substrate proteins into the archaeal 20S proteasome core particle. Is essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C- termini of the proteasomal ATPase function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis. Unfolding activity requires energy from ATP hydrolysis, whereas ATP binding alone promotes ATPase- [...] | 0.826 |
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