STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DppDABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Best Blastp hit = gi|7442566|pir||F75202 'dipeptide abc transporter, dipeptide-binding protein PAB0094 - Pyrococcus abyssi (strain Orsay)' gi|5457578|emb|CAB49069.1| '(AJ248283) dipeptide ABC transporter, dipeptide-binding protein [Pyrococcus abyssi]', score 261, E-value 9.00E-69; Belongs to the ABC transporter superfamily. (326 aa)    
Predicted Functional Partners:
DppC6
ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; Best Blastp hit = gi|13276839|emb|CAC33957.1| (AL589708) putative oligopeptide ABC transporter integral membrane protein [Streptomyces coelicolor], score 207, E-value 2.00E-52.
  
 0.982
DppC5
ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; Best Blastp hit = gi|10172962|dbj|BAB04068.1| (AP001508) oligopeptide ABC transporter (permease) [Bacillus halodurans], score 237, E-value 1.00E-61.
  
 0.981
DppC4
ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; Best Blastp hit = gi|6166161|sp|P26904|DPPC_BACSU DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPC gi|98273|pir||S16649 dipeptide ABC transporter (permease) - Bacillus subtilis gi|2632015|emb|CAA05574.1| (AJ002571) DppC [Bacillus subtilis] gi|2633648|emb|CAB13151.1| (Z99110) dipeptide ABC transporter (permease) [Bacillus subtilis], score 320, E-value 1.00E-86.
  
 0.979
DppC
ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; Best Blastp hit = gi|13815988|gb|AAK42788.1| '(AE006862) ABC transporter, permease protein [Sulfolobus solfataricus]', score 139, E-value 5.00E-32.
  
 0.973
DppC3
ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; Best Blastp hit = gi|7442445|pir||C72282 'oligopeptide ABC transporter, permease protein - Thermotoga maritima (strain MSB8)' gi|4981774|gb|AAD36296.1|AE001778_17 '(AE001778) oligopeptide ABC transporter, permease protein [Thermotoga maritima]', score 327, E-value 1.00E-88.
  
 0.969
DppB
ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; Best Blastp hit = gi|13815983|gb|AAK42786.1| '(AE006861) ABC transporter, permease protein [Sulfolobus solfataricus]', score 224, E-value 1.00E-57.
  
 0.963
DppC2
ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; Best Blastp hit = gi|13815988|gb|AAK42788.1| '(AE006862) ABC transporter, permease protein [Sulfolobus solfataricus]', score 199, E-value 5.00E-50.
  
 0.938
OppA
ABC-type dipeptide/oligopeptide/nickel transport systems, periplasmic components; Best Blastp hit = gi|11355777|pir||H82301 'peptide ABC transporter, periplasmic peptide-binding protein VC0620 [imported] - Vibrio cholerae (group O1 strain N16961)' gi|9655053|gb|AAF93786.1| '(AE004147) peptide ABC transporter, periplasmic peptide-binding protein [Vibrio cholerae]', score 116, E-value 7.00E-25.
 
  
 0.912
PhnL2
ABC-type transport systems, involved in lipoprotein release, ATPase components; Best Blastp hit = gi|9910975|sp|Q9WYI7|Y352_THEMA HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN TM0352 gi|7445989|pir||H72385 'ABC transporter, ATP-binding protein - Thermotoga maritima (strain MSB8)' gi|4980855|gb|AAD35439.1|AE001716_2 '(AE001716) ABC transporter, ATP-binding protein [Thermotoga maritima]', score 256, E-value 2.00E-67.
 
 
   
0.897
CbiO4
ABC-type cobalt transport system, ATPase component; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
    
0.836
Your Current Organism:
Caldanaerobacter subterraneus
NCBI taxonomy Id: 273068
Other names: C. subterraneus subsp. tengcongensis MB4, Caldanaerobacter subterraneus subsp. tengcongensis MB4, Thermoanaerobacter tengcongensis MB4, Thermoanaerobacter tengcongensis str. MB4, Thermoanaerobacter tengcongensis strain MB4
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