STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AraHRibose/xylose/arabinose/galactoside ABC-type transport systems, permease components; Best Blastp hit = gi|10176355|dbj|BAB07450.1| (AP001519) ribose ABC transporter (permease) [Bacillus halodurans], score 229, E-value 4.00E-59; Belongs to the binding-protein-dependent transport system permease family. (318 aa)    
Predicted Functional Partners:
MglA
ABC-type sugar (aldose) transport system, ATPase component; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 0.999
RbsB
Periplasmic sugar-binding proteins; Best Blastp hit = gi|12720371|gb|AAK02237.1| (AE006050) RbsB [Pasteurella multocida], score 325, E-value 5.00E-88.
 0.999
RbsB5
Periplasmic sugar-binding proteins; Best Blastp hit = gi|13472894|ref|NP_104461.1| 'periplasmic ribose-binding protein, sugar ABC transporter [Mesorhizobium loti]' gi|14023641|dbj|BAB50247.1| '(AP003001) periplasmic ribose-binding protein, sugar ABC transporter [Mesorhizobium loti]', score 152, E-value 6.00E-36.
 0.997
MglA4
ABC-type sugar (aldose) transport system, ATPase component; Part of an ABC transporter complex involved in carbohydrate import. Could be involved in ribose, galactose and/or methyl galactoside import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Carbohydrate importer 2 (CUT2) (TC 3.A.1.2) family.
 0.996
MglA2
ABC-type sugar (aldose) transport system, ATPase component; Best Blastp hit = gi|5616304|gb|AAD45713.1|AF160811_1 '(AF160811) L-arabinose transport, ATP binding protein [Bacillus stearothermophilus]', score 453, E-value 1.00E-126.
 
 0.976
RbsD
Uncharacterized components of ribose/xylose transport systems; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose.
 
  
 0.974
RbsB2
Periplasmic sugar-binding proteins; Best Blastp hit = gi|10176465|dbj|BAB07559.1| (AP001520) sugar ABC transporter (sugar-binding protein) [Bacillus halodurans], score 168, E-value 1.00E-40.
 
 0.960
RbsK
Sugar kinases, ribokinase family; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
  
 0.939
AraH3
Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components; Best Blastp hit = gi|6714794|emb|CAB66286.1| (AL136519) bifunctional carbohydrate binding and transport protein. [Streptomyces coelicolor A3(2)], score 207, E-value 2.00E-52; Belongs to the binding-protein-dependent transport system permease family.
  
  
 
0.908
PurR2
Transcriptional regulator; Best Blastp hit = gi|1168844|sp|P46828|CCPA_BACME GLUCOSE-RESISTANCE AMYLASE REGULATOR (CATABOLITE CONTROL PROTEIN) gi|2126809|pir||I39800 catabolite control protein - Bacillus megaterium gi|415664|gb|AAA22295.1| (L26052) catabolite control protein [Bacillus megaterium], score 256, E-value 2.00E-67.
  
  
 0.811
Your Current Organism:
Caldanaerobacter subterraneus
NCBI taxonomy Id: 273068
Other names: C. subterraneus subsp. tengcongensis MB4, Caldanaerobacter subterraneus subsp. tengcongensis MB4, Thermoanaerobacter tengcongensis MB4, Thermoanaerobacter tengcongensis str. MB4, Thermoanaerobacter tengcongensis strain MB4
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