STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CbiOABC-type cobalt transport system, ATPase component; Probably part of an ABC transporter complex. Responsible for energy coupling to the transport system (By similarity). (242 aa)    
Predicted Functional Partners:
CbiQ
ABC-type cobalt transport system, permease component CbiQ and related transporters; Best Blastp hit = gi|2128946|pir||B64496 hypothetical protein MJ1571 - Methanococcus jannaschii gi|1592192|gb|AAB99588.1| (U67597) cobalt transport protein (cbiQ) [Methanococcus jannaschii], score 145, E-value 8.00E-34.
 
 0.998
CbiM
Best Blastp hit = gi|2127816|pir||H64495 cobalamin biosynthesis protein M - Methanococcus jannaschii gi|1592191|gb|AAB99587.1| (U67597) cobalamin biosynthesis protein (cbiM) [Methanococcus jannaschii], score 192, E-value 4.00E-48.
 
 0.997
TTE0248
Conserved hypothetical protein; Best Blastp hit = gi|2128945|pir||A64496 hypothetical protein MJ1570 - Methanococcus jannaschii gi|1500464|gb|AAB99594.1| (U67597) M. jannaschii predicted coding region MJ1570 [Methanococcus jannaschii], score 50.4, E-value 7.00E-06.
 
 0.993
CbiM2
Best Blastp hit = gi|2127816|pir||H64495 cobalamin biosynthesis protein M - Methanococcus jannaschii gi|1592191|gb|AAB99587.1| (U67597) cobalamin biosynthesis protein (cbiM) [Methanococcus jannaschii], score 203, E-value 1.00E-51.
 
 0.977
TTE1694
Conserved hypothetical protein; Best Blastp hit = gi|2128945|pir||A64496 hypothetical protein MJ1570 - Methanococcus jannaschii gi|1500464|gb|AAB99594.1| (U67597) M. jannaschii predicted coding region MJ1570 [Methanococcus jannaschii], score 62, E-value 2.00E-09.
 
 0.973
CbiQ3
ABC-type cobalt transport system, permease component CbiQ and related transporters; Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
 0.965
NikR
Putative nickel-responsive regulator; Transcriptional regulator; Belongs to the transcriptional regulatory CopG/NikR family.
 
   
 0.903
TTE0258
ABC-type transport systems, involved in lipoprotein release, permease components; Best Blastp hit = gi|7469821|pir||S76946 hypothetical protein - Synechocystis sp. (strain PCC 6803) gi|1653948|dbj|BAA18858.1| (D90917) hypothetical protein [Synechocystis sp.], score 185, E-value 8.00E-46.
 
    0.903
DppD2
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Best Blastp hit = gi|11355773|pir||E82301 'peptide ABC transporter, ATP-binding protein VC0617 [imported] - Vibrio cholerae (group O1 strain N16961)' gi|9655050|gb|AAF93783.1| '(AE004147) peptide ABC transporter, ATP-binding protein [Vibrio cholerae]', score 260, E-value 2.00E-68; Belongs to the ABC transporter superfamily.
 
    
0.900
TTE1198
ABC-type transport systems, involved in lipoprotein release, permease components; Best Blastp hit = gi|7469821|pir||S76946 hypothetical protein - Synechocystis sp. (strain PCC 6803) gi|1653948|dbj|BAA18858.1| (D90917) hypothetical protein [Synechocystis sp.], score 196, E-value 4.00E-49.
 
 
    0.899
Your Current Organism:
Caldanaerobacter subterraneus
NCBI taxonomy Id: 273068
Other names: C. subterraneus subsp. tengcongensis MB4, Caldanaerobacter subterraneus subsp. tengcongensis MB4, Thermoanaerobacter tengcongensis MB4, Thermoanaerobacter tengcongensis str. MB4, Thermoanaerobacter tengcongensis strain MB4
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