STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GlnQABC-type polar amino acid transport system, ATPase component; Best Blastp hit = gi|11498288|ref|NP_069514.1| 'glutamine ABC transporter, ATP-binding protein (glnQ) [Archaeoglobus fulgidus]' gi|7442524|pir||H69334 glutamine transport protein glnQ - Archaeoglobus fulgidus gi|2649950|gb|AAB90561.1| '(AE001058) glutamine ABC transporter, ATP-binding protein (glnQ) [Archaeoglobus fulgidus]', score 342, E-value 4.00E-93. (240 aa)    
Predicted Functional Partners:
ArtM
ABC-type amino acid transport system, permease component; Best Blastp hit = gi|13701651|dbj|BAB42944.1| '(AP003135) ORFID:SA1675; hypothetical protein, similar to glutamine-binding periplasmic protein [Staphylococcus aureus]' gi|13876171|dbj|BAB46777.1| (AP003363) amino-acid ABC transporter permease protein homolog [Staphylococcus aureus], score 214, E-value 6.00E-55.
 0.999
ArtI
ABC-type amino acid transport system, periplasmic component; Best Blastp hit = gi|1731062|sp|P54535|YQIX_BACSU PROBABLE AMINO-ACID ABC TRANSPORTER EXTRACELLULAR BINDING PROTEIN YQIX PRECURSOR gi|7442313|pir||F69962 amino acid ABC transporter (binding protein) homolog yqiX - Bacillus subtilis gi|1303949|dbj|BAA12604.1| (D84432) YqiX [Bacillus subtilis] gi|2634832|emb|CAB14329.1| (Z99116) similar to amino acid ABC transporter (binding protein) [Bacillus subtilis], score 197, E-value 9.00E-50; Belongs to the bacterial solute-binding protein 3 family.
 0.996
MdlB4
ABC-type multidrug/protein/lipid transport system, ATPase component; Best Blastp hit = gi|7445872|pir||F72268 'ABC transporter, ATP-binding protein - Thermotoga maritima (strain MSB8)' gi|4981878|gb|AAD36392.1|AE001786_5 '(AE001786) ABC transporter, ATP-binding protein [Thermotoga maritima]', score 249, E-value 5.00E-65.
 
    
0.908
MdlB12
ABC-type multidrug/protein/lipid transport system, ATPase component; Best Blastp hit = gi|7445648|pir||B71182 probable ABC transporter ATP-binding protein - Pyrococcus horikoshii gi|3258166|dbj|BAA30849.1| (AP000007) 582aa long hypothetical ABC transporter ATP-binding protein [Pyrococcus horikoshii], score 258, E-value 1.00E-67.
 
    
0.906
TTE0258
ABC-type transport systems, involved in lipoprotein release, permease components; Best Blastp hit = gi|7469821|pir||S76946 hypothetical protein - Synechocystis sp. (strain PCC 6803) gi|1653948|dbj|BAA18858.1| (D90917) hypothetical protein [Synechocystis sp.], score 185, E-value 8.00E-46.
 
 
    0.900
TTE1198
ABC-type transport systems, involved in lipoprotein release, permease components; Best Blastp hit = gi|7469821|pir||S76946 hypothetical protein - Synechocystis sp. (strain PCC 6803) gi|1653948|dbj|BAA18858.1| (D90917) hypothetical protein [Synechocystis sp.], score 196, E-value 4.00E-49.
 
 
    0.900
DppC5
ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; Best Blastp hit = gi|10172962|dbj|BAB04068.1| (AP001508) oligopeptide ABC transporter (permease) [Bacillus halodurans], score 237, E-value 1.00E-61.
    
 0.812
DppC6
ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; Best Blastp hit = gi|13276839|emb|CAC33957.1| (AL589708) putative oligopeptide ABC transporter integral membrane protein [Streptomyces coelicolor], score 207, E-value 2.00E-52.
    
 0.797
ArgG
Argininosuccinate synthase; Best Blastp hit = gi|11131231|sp|P57158|ASSY_BUCAI ARGININOSUCCINATE SYNTHASE (CITRULLINE--ASPARTATE LIGASE) gi|10038738|dbj|BAB12773.1| (AP001118) argininosuccinate synthase [Buchnera sp. APS], score 454, E-value 1.00E-126; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
  
  
 0.644
CcmA16
ABC-type multidrug transport system, ATPase component; Best Blastp hit = gi|7445600|pir||S77512 ABC-type transport protein slr1901 - Synechocystis sp. (strain PCC 6803) gi|1652437|dbj|BAA17359.1| (D90905) ABC transporter [Synechocystis sp.], score 219, E-value 5.00E-56.
 
    
0.630
Your Current Organism:
Caldanaerobacter subterraneus
NCBI taxonomy Id: 273068
Other names: C. subterraneus subsp. tengcongensis MB4, Caldanaerobacter subterraneus subsp. tengcongensis MB4, Thermoanaerobacter tengcongensis MB4, Thermoanaerobacter tengcongensis str. MB4, Thermoanaerobacter tengcongensis strain MB4
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