STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TTE0610Hypothetical protein; Belongs to the UPF0236 family. (467 aa)    
Predicted Functional Partners:
Sps1
Serine/threonine protein kinase; Best Blastp hit = gi|10175124|dbj|BAB06223.1| (AP001515) serine/threonine protein kinase [Bacillus halodurans], score 319, E-value 7.00E-86; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.
  
 
 0.799
ProP10
Permeases of the major facilitator superfamily; Best Blastp hit = gi|11356537|pir||T45464 tetracycline resistance protein [imported] - Clostridium perfringens gi|1845540|dbj|BAA19230.1| (AB001076) tetracycline resistance protein [Clostridium perfringens], score 53.1, E-value 3.00E-06.
  
     0.602
ProP5
Permeases of the major facilitator superfamily; Best Blastp hit = gi|11356537|pir||T45464 tetracycline resistance protein [imported] - Clostridium perfringens gi|1845540|dbj|BAA19230.1| (AB001076) tetracycline resistance protein [Clostridium perfringens], score 57.4, E-value 3.00E-07.
 
    0.583
TTE0406
Hypothetical protein.
  
     0.538
Prc2
Periplasmic protease.
  
     0.536
Sun
tRNA and rRNA cytosine-C5-methylases; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
  
 0.524
OppA6
ABC-type dipeptide/oligopeptide/nickel transport systems, periplasmic components; Best Blastp hit = gi|98474|pir||A38447 oligopeptide ABC transport system substrate-binding protein oppA precursor - Bacillus subtilis gi|143603|gb|AAA62687.1| (M57689) sporulation protein [Bacillus subtilis] gi|2633497|emb|CAB13000.1| (Z99110) oligopeptide ABC transporter (binding protein) [Bacillus subtilis], score 406, E-value 1.00E-112.
       0.518
TTE2745
Hypothetical protein.
  
     0.478
TTE1910
Hypothetical protein.
  
     0.476
FtsI3
Best Blastp hit = gi|10175193|dbj|BAB06291.1| (AP001516) stage V sporulation protein (soprulation specific penicillin-binding protein) (spore cortex) [Bacillus halodurans], score 464, E-value 1.00E-129.
  
 
 0.452
Your Current Organism:
Caldanaerobacter subterraneus
NCBI taxonomy Id: 273068
Other names: C. subterraneus subsp. tengcongensis MB4, Caldanaerobacter subterraneus subsp. tengcongensis MB4, Thermoanaerobacter tengcongensis MB4, Thermoanaerobacter tengcongensis str. MB4, Thermoanaerobacter tengcongensis strain MB4
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