STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MgsAMethylglyoxal synthase; Catalyzes the formation of methylglyoxal from dihydroxyacetone phosphate. (129 aa)    
Predicted Functional Partners:
CoaE
Dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
 
    0.909
BmrU
Conserved hypothetical protein; Best Blastp hit = gi|10174571|dbj|BAB05672.1| (AP001513) BH1953; unknown conserved protein [Bacillus halodurans], score 141, E-value 1.00E-32.
      0.896
FtsW
Bacterial cell division membrane protein; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
     
 0.819
BirA
Biotin-(acetyl-CoA carboxylase) ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
  
  
 0.778
SpoIVFB
Zn-dependent protease; Best Blastp hit = gi|2499926|sp|Q57837|Y392_METJA HYPOTHETICAL PROTEIN MJ0392 gi|2128005|pir||H64348 hypothetical protein homolog MJ0392 - Methanococcus jannaschii gi|1592287|gb|AAB98382.1| (U67492) conserved hypothetical protein [Methanococcus jannaschii], score 82.8, E-value 5.00E-15.
       0.753
TTE0909
Fe-S oxidoreductases family 2; Best Blastp hit = gi|7462348|pir||H72336 conserved hypothetical protein - Thermotoga maritima (strain MSB8) gi|4981298|gb|AAD35852.1|AE001746_13 (AE001746) conserved hypothetical protein [Thermotoga maritima], score 555, E-value 1.00E-157.
       0.720
TTE0910
Conserved hypothetical protein; Best Blastp hit = gi|7469991|pir||S77440 hypothetical protein sll1084 - Synechocystis sp. (strain PCC 6803) gi|1652365|dbj|BAA17287.1| (D90905) hypothetical protein [Synechocystis sp.], score 90.1, E-value 2.00E-17.
       0.720
CafA
Best Blastp hit = gi|12720583|gb|AAK02426.1| (AE006070) CafA [Pasteurella multocida], score 276, E-value 5.00E-73.
  
    0.716
DapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate.
  
    0.712
PcnB
tRNA nucleotidyltransferase/poly(A) polymerase; Best Blastp hit = gi|7520819|pir||C70485 poly A polymerase - Aquifex aeolicus gi|2984364|gb|AAC07883.1| (AE000776) poly A polymerase [Aquifex aeolicus], score 201, E-value 2.00E-50; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
  
  
 0.697
Your Current Organism:
Caldanaerobacter subterraneus
NCBI taxonomy Id: 273068
Other names: C. subterraneus subsp. tengcongensis MB4, Caldanaerobacter subterraneus subsp. tengcongensis MB4, Thermoanaerobacter tengcongensis MB4, Thermoanaerobacter tengcongensis str. MB4, Thermoanaerobacter tengcongensis strain MB4
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