Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CheY7 | FliA2 | TTE1304 | TTE1317 | CheY-like receiver domains; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process. | DNA-directed RNA polymerase specialized sigma subunit; Best Blastp hit = gi|2529267|gb|AAB81186.1| (L47358) sigma factor [Paenibacillus polymyxa], score 232, E-value 3.00E-60; Belongs to the sigma-70 factor family. | 0.776 |
| CheY7 | RsbW3 | TTE1304 | TTE1316 | CheY-like receiver domains; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process. | Anti-sigma regulatory factor (Ser/Thr protein kinase); Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition. | 0.881 |
| CheY7 | SpoIIAA | TTE1304 | TTE1315 | CheY-like receiver domains; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process. | Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); Best Blastp hit = gi|10174153|dbj|BAB05255.1| (AP001512) anti-sigma F factor antagonist (stage II sporulation protein AA) [Bacillus halodurans], score 100, E-value 5.00E-21; Belongs to the anti-sigma-factor antagonist family. | 0.780 |
| CheY7 | TTE0170 | TTE1304 | TTE0170 | CheY-like receiver domains; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process. | Transcription regulator of sigma-E/sigma-K-dependent gene spoIIID; Best Blastp hit = gi|134766|sp|P15281|SP3D_BACSU STAGE III SPORULATION PROTEIN D (14 KD TRANSCRIPTION FACTOR) gi|98493|pir||A33472 transcription regulator of sigma-E/sigma-K-dependent gene spoIIID - Bacillus subtilis gi|580763|emb|CAA33541.1| (X15520) transcription factor (AA 1-93) [Bacillus subtilis] gi|580931|emb|CAA36295.1| (X52076) spoIIID protein (AA 1-93) [Bacillus subtilis] gi|1684653|emb|CAB05384.1| (Z82987) SpoIIID [Bacillus subtilis] gi|2636167|emb|CAB15659.1| (Z99122) transcriptional regulator [Bacillus subti [...] | 0.870 |
| CheY7 | TTE1319 | TTE1304 | TTE1319 | CheY-like receiver domains; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process. | Spore formation protein spoVAC; Best Blastp hit = gi|730784|sp|P40868|SP53_BACSU STAGE V SPORULATION PROTEIN AC gi|7475849|pir||F69714 spore formation protein spoVAC - Bacillus subtilis gi|1304003|dbj|BAA12658.1| (D84432) SpoVAC [Bacillus subtilis] gi|2634777|emb|CAB14274.1| (Z99116) mutants lead to the production of immature spores (stage V sporulation) [Bacillus subtilis], score 137, E-value 5.00E-32. | 0.802 |
| CheY7 | TTE1320 | TTE1304 | TTE1320 | CheY-like receiver domains; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process. | Spore formation protein spoVAD; Best Blastp hit = gi|730785|sp|P40869|SP54_BACSU STAGE V SPORULATION PROTEIN AD gi|7475850|pir||G69714 spore formation protein spoVAD - Bacillus subtilis gi|1304004|dbj|BAA12659.1| (D84432) SpoVAD [Bacillus subtilis] gi|2634776|emb|CAB14273.1| (Z99116) mutants lead to the production of immature spores (stage V sporulation) [Bacillus subtilis], score 301, E-value 6.00E-81. | 0.865 |
| CheY7 | TTE1321 | TTE1304 | TTE1321 | CheY-like receiver domains; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process. | Sporulation protein; Best Blastp hit = gi|10174187|dbj|BAB05289.1| (AP001512) sporulation protein [Bacillus halodurans], score 90.1, E-value 9.00E-18. | 0.783 |
| CheY7 | TTE2552 | TTE1304 | TTE2552 | CheY-like receiver domains; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process. | pro-sigma-E processing factor spoIIR; Best Blastp hit = gi|730770|sp|P39151|SP2R_BACSU STAGE II SPORULATION PROTEIN R gi|2127223|pir||I40474 pro-sigma-E processing factor spoIIR - Bacillus subtilis gi|556879|emb|CAA86103.1| (Z38002) Unknown [Bacillus subtilis] gi|2636222|emb|CAB15714.1| '(Z99122) alternate gene name: ipc-27d, csfX [Bacillus subtilis]' gi|1095417|prf||2108403B spoIIR gene [Bacillus subtilis], score 120, E-value 1.00E-26. | 0.832 |
| FliA2 | CheY7 | TTE1317 | TTE1304 | DNA-directed RNA polymerase specialized sigma subunit; Best Blastp hit = gi|2529267|gb|AAB81186.1| (L47358) sigma factor [Paenibacillus polymyxa], score 232, E-value 3.00E-60; Belongs to the sigma-70 factor family. | CheY-like receiver domains; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process. | 0.776 |
| FliA2 | RsbW3 | TTE1317 | TTE1316 | DNA-directed RNA polymerase specialized sigma subunit; Best Blastp hit = gi|2529267|gb|AAB81186.1| (L47358) sigma factor [Paenibacillus polymyxa], score 232, E-value 3.00E-60; Belongs to the sigma-70 factor family. | Anti-sigma regulatory factor (Ser/Thr protein kinase); Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition. | 0.992 |
| FliA2 | SpoIIAA | TTE1317 | TTE1315 | DNA-directed RNA polymerase specialized sigma subunit; Best Blastp hit = gi|2529267|gb|AAB81186.1| (L47358) sigma factor [Paenibacillus polymyxa], score 232, E-value 3.00E-60; Belongs to the sigma-70 factor family. | Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); Best Blastp hit = gi|10174153|dbj|BAB05255.1| (AP001512) anti-sigma F factor antagonist (stage II sporulation protein AA) [Bacillus halodurans], score 100, E-value 5.00E-21; Belongs to the anti-sigma-factor antagonist family. | 0.971 |
| FliA2 | TTE0170 | TTE1317 | TTE0170 | DNA-directed RNA polymerase specialized sigma subunit; Best Blastp hit = gi|2529267|gb|AAB81186.1| (L47358) sigma factor [Paenibacillus polymyxa], score 232, E-value 3.00E-60; Belongs to the sigma-70 factor family. | Transcription regulator of sigma-E/sigma-K-dependent gene spoIIID; Best Blastp hit = gi|134766|sp|P15281|SP3D_BACSU STAGE III SPORULATION PROTEIN D (14 KD TRANSCRIPTION FACTOR) gi|98493|pir||A33472 transcription regulator of sigma-E/sigma-K-dependent gene spoIIID - Bacillus subtilis gi|580763|emb|CAA33541.1| (X15520) transcription factor (AA 1-93) [Bacillus subtilis] gi|580931|emb|CAA36295.1| (X52076) spoIIID protein (AA 1-93) [Bacillus subtilis] gi|1684653|emb|CAB05384.1| (Z82987) SpoIIID [Bacillus subtilis] gi|2636167|emb|CAB15659.1| (Z99122) transcriptional regulator [Bacillus subti [...] | 0.692 |
| FliA2 | TTE1319 | TTE1317 | TTE1319 | DNA-directed RNA polymerase specialized sigma subunit; Best Blastp hit = gi|2529267|gb|AAB81186.1| (L47358) sigma factor [Paenibacillus polymyxa], score 232, E-value 3.00E-60; Belongs to the sigma-70 factor family. | Spore formation protein spoVAC; Best Blastp hit = gi|730784|sp|P40868|SP53_BACSU STAGE V SPORULATION PROTEIN AC gi|7475849|pir||F69714 spore formation protein spoVAC - Bacillus subtilis gi|1304003|dbj|BAA12658.1| (D84432) SpoVAC [Bacillus subtilis] gi|2634777|emb|CAB14274.1| (Z99116) mutants lead to the production of immature spores (stage V sporulation) [Bacillus subtilis], score 137, E-value 5.00E-32. | 0.890 |
| FliA2 | TTE1320 | TTE1317 | TTE1320 | DNA-directed RNA polymerase specialized sigma subunit; Best Blastp hit = gi|2529267|gb|AAB81186.1| (L47358) sigma factor [Paenibacillus polymyxa], score 232, E-value 3.00E-60; Belongs to the sigma-70 factor family. | Spore formation protein spoVAD; Best Blastp hit = gi|730785|sp|P40869|SP54_BACSU STAGE V SPORULATION PROTEIN AD gi|7475850|pir||G69714 spore formation protein spoVAD - Bacillus subtilis gi|1304004|dbj|BAA12659.1| (D84432) SpoVAD [Bacillus subtilis] gi|2634776|emb|CAB14273.1| (Z99116) mutants lead to the production of immature spores (stage V sporulation) [Bacillus subtilis], score 301, E-value 6.00E-81. | 0.892 |
| FliA2 | TTE1321 | TTE1317 | TTE1321 | DNA-directed RNA polymerase specialized sigma subunit; Best Blastp hit = gi|2529267|gb|AAB81186.1| (L47358) sigma factor [Paenibacillus polymyxa], score 232, E-value 3.00E-60; Belongs to the sigma-70 factor family. | Sporulation protein; Best Blastp hit = gi|10174187|dbj|BAB05289.1| (AP001512) sporulation protein [Bacillus halodurans], score 90.1, E-value 9.00E-18. | 0.886 |
| FliA2 | TTE2552 | TTE1317 | TTE2552 | DNA-directed RNA polymerase specialized sigma subunit; Best Blastp hit = gi|2529267|gb|AAB81186.1| (L47358) sigma factor [Paenibacillus polymyxa], score 232, E-value 3.00E-60; Belongs to the sigma-70 factor family. | pro-sigma-E processing factor spoIIR; Best Blastp hit = gi|730770|sp|P39151|SP2R_BACSU STAGE II SPORULATION PROTEIN R gi|2127223|pir||I40474 pro-sigma-E processing factor spoIIR - Bacillus subtilis gi|556879|emb|CAA86103.1| (Z38002) Unknown [Bacillus subtilis] gi|2636222|emb|CAB15714.1| '(Z99122) alternate gene name: ipc-27d, csfX [Bacillus subtilis]' gi|1095417|prf||2108403B spoIIR gene [Bacillus subtilis], score 120, E-value 1.00E-26. | 0.566 |
| RsbW3 | CheY7 | TTE1316 | TTE1304 | Anti-sigma regulatory factor (Ser/Thr protein kinase); Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition. | CheY-like receiver domains; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process. | 0.881 |
| RsbW3 | FliA2 | TTE1316 | TTE1317 | Anti-sigma regulatory factor (Ser/Thr protein kinase); Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition. | DNA-directed RNA polymerase specialized sigma subunit; Best Blastp hit = gi|2529267|gb|AAB81186.1| (L47358) sigma factor [Paenibacillus polymyxa], score 232, E-value 3.00E-60; Belongs to the sigma-70 factor family. | 0.992 |
| RsbW3 | SpoIIAA | TTE1316 | TTE1315 | Anti-sigma regulatory factor (Ser/Thr protein kinase); Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition. | Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); Best Blastp hit = gi|10174153|dbj|BAB05255.1| (AP001512) anti-sigma F factor antagonist (stage II sporulation protein AA) [Bacillus halodurans], score 100, E-value 5.00E-21; Belongs to the anti-sigma-factor antagonist family. | 0.997 |
| RsbW3 | TTE0170 | TTE1316 | TTE0170 | Anti-sigma regulatory factor (Ser/Thr protein kinase); Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition. | Transcription regulator of sigma-E/sigma-K-dependent gene spoIIID; Best Blastp hit = gi|134766|sp|P15281|SP3D_BACSU STAGE III SPORULATION PROTEIN D (14 KD TRANSCRIPTION FACTOR) gi|98493|pir||A33472 transcription regulator of sigma-E/sigma-K-dependent gene spoIIID - Bacillus subtilis gi|580763|emb|CAA33541.1| (X15520) transcription factor (AA 1-93) [Bacillus subtilis] gi|580931|emb|CAA36295.1| (X52076) spoIIID protein (AA 1-93) [Bacillus subtilis] gi|1684653|emb|CAB05384.1| (Z82987) SpoIIID [Bacillus subtilis] gi|2636167|emb|CAB15659.1| (Z99122) transcriptional regulator [Bacillus subti [...] | 0.888 |
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