STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UppSUndecaprenyl pyrophosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids. (247 aa)    
Predicted Functional Partners:
CdsA
CDP-diglyceride synthetase; Best Blastp hit = gi|10175042|dbj|BAB06141.1| (AP001515) phosphatidate cytidylyltransferase [Bacillus halodurans], score 135, E-value 5.00E-31; Belongs to the CDS family.
 
  
 0.997
Dxr
1-deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family.
  
  
 0.983
IspA
Best Blastp hit = gi|7447349|pir||S74538 geranylgeranyl pyrophosphate synthase - Synechocystis sp. (strain PCC 6803) gi|1651762|dbj|BAA16690.1| (D90899) geranylgeranyl pyrophosphate synthase [Synechocystis sp.], score 273, E-value 2.00E-72; Belongs to the FPP/GGPP synthase family.
 
 
 0.969
TTE1401
Predicted membrane-associated Zn-dependent protease 1; Best Blastp hit = gi|7474650|pir||C69881 conserved hypothetical protein yluC - Bacillus subtilis gi|2634028|emb|CAB13529.1| (Z99112) similar to hypothetical proteins [Bacillus subtilis], score 158, E-value 1.00E-37.
 
  
 0.959
Frr
Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family.
 
  
 0.957
IspA2
Geranylgeranyl pyrophosphate synthase; Best Blastp hit = gi|12723034|gb|AAK04279.1|AE006256_1 (AE006256) prenyl transferase [Lactococcus lactis subsp. lactis], score 194, E-value 2.00E-48; Belongs to the FPP/GGPP synthase family.
 
 
 0.939
BacA
Conserved hypothetical protein; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.
     
 0.927
PyrH
Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP.
  
  
 0.920
PgpB2
Membrane-associated phospholipid phosphatase; Best Blastp hit = gi|10175308|dbj|BAB06406.1| (AP001516) BH2687; unknown conserved protein in others [Bacillus halodurans], score 110, E-value 9.00E-24.
  
 
 0.914
TTE2484
Conserved hypothetical protein; Best Blastp hit = gi|12724323|gb|AAK05439.1|AE006366_8 (AE006366) HYPOTHETICAL PROTEIN [Lactococcus lactis subsp. lactis], score 79.3, E-value 3.00E-14.
     
  0.900
Your Current Organism:
Caldanaerobacter subterraneus
NCBI taxonomy Id: 273068
Other names: C. subterraneus subsp. tengcongensis MB4, Caldanaerobacter subterraneus subsp. tengcongensis MB4, Thermoanaerobacter tengcongensis MB4, Thermoanaerobacter tengcongensis str. MB4, Thermoanaerobacter tengcongensis strain MB4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.