STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TTE1484Conserved hypothetical protein; Best Blastp hit = gi|7475171|pir||G69874 hypothetical protein ylbJ - Bacillus subtilis gi|2340006|emb|CAB11356.1| (Z98682) YlbJ protein [Bacillus subtilis] gi|2633874|emb|CAB13376.1| (Z99111) ylbJ [Bacillus subtilis], score 215, E-value 7.00E-55. (386 aa)    
Predicted Functional Partners:
TTE0969
Stage IV sporulation protein; Best Blastp hit = gi|10173976|dbj|BAB05079.1| (AP001511) stage IV sporulation protein [Bacillus halodurans], score 125, E-value 8.00E-28.
 
   
 0.862
TTE0967
Conserved hypothetical protein; Best Blastp hit = gi|1730996|sp|P54468|YQFC_BACSU HYPOTHETICAL 10.8 KD PROTEIN IN RPSU-PHOH INTEREGENIC REGION gi|7475305|pir||C69953 hypothetical protein yqfC - Bacillus subtilis gi|1303819|dbj|BAA12475.1| (D84432) YqfC [Bacillus subtilis] gi|2634982|emb|CAB14478.1| (Z99117) yqfC [Bacillus subtilis], score 65.5, E-value 1.00E-10.
 
   
 0.848
TTE0170
Transcription regulator of sigma-E/sigma-K-dependent gene spoIIID; Best Blastp hit = gi|134766|sp|P15281|SP3D_BACSU STAGE III SPORULATION PROTEIN D (14 KD TRANSCRIPTION FACTOR) gi|98493|pir||A33472 transcription regulator of sigma-E/sigma-K-dependent gene spoIIID - Bacillus subtilis gi|580763|emb|CAA33541.1| (X15520) transcription factor (AA 1-93) [Bacillus subtilis] gi|580931|emb|CAA36295.1| (X52076) spoIIID protein (AA 1-93) [Bacillus subtilis] gi|1684653|emb|CAB05384.1| (Z82987) SpoIIID [Bacillus subtilis] gi|2636167|emb|CAB15659.1| (Z99122) transcriptional regulator [Bacillus subti [...]
  
  
 0.803
TTE1638
Sporulation specific protein; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family.
  
   
 0.802
TTE1616
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
   
 0.798
TTE2552
pro-sigma-E processing factor spoIIR; Best Blastp hit = gi|730770|sp|P39151|SP2R_BACSU STAGE II SPORULATION PROTEIN R gi|2127223|pir||I40474 pro-sigma-E processing factor spoIIR - Bacillus subtilis gi|556879|emb|CAA86103.1| (Z38002) Unknown [Bacillus subtilis] gi|2636222|emb|CAB15714.1| '(Z99122) alternate gene name: ipc-27d, csfX [Bacillus subtilis]' gi|1095417|prf||2108403B spoIIR gene [Bacillus subtilis], score 120, E-value 1.00E-26.
  
   
 0.798
TTE2450
Conserved hypothetical protein; Best Blastp hit = gi|10172686|dbj|BAB03793.1| (AP001507) BH0074; unknown conserved protein in B. subtilis [Bacillus halodurans], score 85.9, E-value 1.00E-16.
  
   
 0.790
TTE1287
Best Blastp hit = gi|10175414|dbj|BAB06512.1| (AP001516) mutants block sporulation after engulfment [Bacillus halodurans], score 233, E-value 4.00E-60.
  
    0.780
TTE1289
Best Blastp hit = gi|1710826|sp|P49784|S3AG_BACSU STAGE III SPORULATION PROTEIN AG gi|1000365|gb|AAA76726.1| (U35252) SpoIIIAG [Bacillus subtilis], score 79.3, E-value 3.00E-14.
  
   
 0.777
gpr
Spore protease; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
     0.774
Your Current Organism:
Caldanaerobacter subterraneus
NCBI taxonomy Id: 273068
Other names: C. subterraneus subsp. tengcongensis MB4, Caldanaerobacter subterraneus subsp. tengcongensis MB4, Thermoanaerobacter tengcongensis MB4, Thermoanaerobacter tengcongensis str. MB4, Thermoanaerobacter tengcongensis strain MB4
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