STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ProP6Permeases of the major facilitator superfamily; Best Blastp hit = gi|5053137|gb|AAD38864.1| (L09121) hypothetical protein [Thermus thermophilus], score 233, E-value 4.00E-60. (376 aa)    
Predicted Functional Partners:
TTE1516
Hypothetical protein.
 
     0.843
DapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
       0.565
TTE1517
Predicted RNA-binding protein homologous to eukaryotic snRNP; Best Blastp hit = gi|10175136|dbj|BAB06235.1| (AP001515) fibronectin/fibrinogen-binding protein [Bacillus halodurans], score 413, E-value 1.00E-114.
       0.555
TTE1513
Conserved hypothetical protein; Best Blastp hit = gi|7451793|pir||A69878 conserved hypothetical protein yloC - Bacillus subtilis gi|2337796|emb|CAA74270.1| (Y13937) YloC protein [Bacillus subtilis] gi|2633939|emb|CAB13440.1| (Z99112) similar to hypothetical proteins [Bacillus subtilis], score 206, E-value 3.00E-52.
       0.485
nnrE
Predicted sugar kinase; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both e [...]
       0.403
Your Current Organism:
Caldanaerobacter subterraneus
NCBI taxonomy Id: 273068
Other names: C. subterraneus subsp. tengcongensis MB4, Caldanaerobacter subterraneus subsp. tengcongensis MB4, Thermoanaerobacter tengcongensis MB4, Thermoanaerobacter tengcongensis str. MB4, Thermoanaerobacter tengcongensis strain MB4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.