STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AarF2Predicted unusual protein kinase; Best Blastp hit = gi|10175329|dbj|BAB06427.1| (AP001516) ABC transporter [Bacillus halodurans], score 373, E-value 1.00E-102. (558 aa)    
Predicted Functional Partners:
TTE1841
Conserved hypothetical protein; Best Blastp hit = gi|10175330|dbj|BAB06428.1| (AP001516) BH2709; unknown [Bacillus halodurans], score 70.5, E-value 5.00E-12.
 
     0.922
AcrR3
Transcriptional regulator; Best Blastp hit = gi|481591|pir||S38906 hypothetical protein 4 - Clostridium pasteurianum gi|431950|emb|CAA82211.1| (Z28353) similar to a B.subtilis gene (GB: BACHEMEHY_5) [Clostridium pasteurianum], score 64.3, E-value 1.00E-09.
       0.749
RssA
Predicted esterase of the alpha-beta hydrolase superfamily; Best Blastp hit = gi|6648033|sp|O34731|YLBK_BACSU HYPOTHETICAL 28.3 KDA PROTEIN IN CTAG-RPMF INTERGENIC REGION gi|7474645|pir||H69874 conserved hypothetical protein ylbK - Bacillus subtilis gi|2340007|emb|CAB11357.1| (Z98682) YlbK protein [Bacillus subtilis] gi|2633875|emb|CAB13377.1| (Z99111) similar to hypothetical proteins [Bacillus subtilis], score 155, E-value 6.00E-37.
   
   0.723
PncA
Amidases related to nicotinamidase; Best Blastp hit = gi|7517111|pir||C72463 hypothetical protein APE2350 - Aeropyrum pernix (strain K1) gi|5106052|dbj|BAA81363.1| (AP000064) 231aa long hypothetical protein [Aeropyrum pernix], score 60.5, E-value 2.00E-08.
  
    0.557
PaaI2
Uncharacterized protein, possibly involved in aromatic compounds catabolism; Best Blastp hit = gi|11499845|ref|NP_071089.1| conserved hypothetical protein [Archaeoglobus fulgidus] gi|3334444|sp|O28020|YM64_ARCFU HYPOTHETICAL PROTEIN AF2264 gi|7430238|pir||H69532 conserved hypothetical protein AF2264 - Archaeoglobus fulgidus gi|2648253|gb|AAB88986.1| (AE000948) conserved hypothetical protein [Archaeoglobus fulgidus], score 87.4, E-value 7.00E-17.
  
    0.453
HisI
Phosphoribosyl-AMP cyclohydrolase; Best Blastp hit = gi|6175609|gb|AAF05095.1|AF150930_4 (AF150930) phosphoribosyl-AMP cyclohydrolase [Thermoanaerobacter ethanolicus], score 237, E-value 8.00E-62; In the C-terminal section; belongs to the PRA-PH family.
       0.403
Your Current Organism:
Caldanaerobacter subterraneus
NCBI taxonomy Id: 273068
Other names: C. subterraneus subsp. tengcongensis MB4, Caldanaerobacter subterraneus subsp. tengcongensis MB4, Thermoanaerobacter tengcongensis MB4, Thermoanaerobacter tengcongensis str. MB4, Thermoanaerobacter tengcongensis strain MB4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.