STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
galTBest Blastp hit = gi|11386835|sp|Q9KDV2|GAL7_BACHD GALACTOSE-1-PHOSPHATE URIDYLYLTRANSFERASE (GAL-1-P URIDYLYLTRANSFERASE) gi|10173724|dbj|BAB04828.1| (AP001510) galactose-1-phosphate uridyltransferase [Bacillus halodurans], score 520, E-value 1.00E-146 (519 aa)    
Predicted Functional Partners:
GalK
Galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P); Belongs to the GHMP kinase family. GalK subfamily
 
  
 0.999
GalE
UDP-glucose 4-epimerase; Best Blastp hit = gi|11386836|sp|Q9KDV3|GALE_BACHD UDP-GLUCOSE 4-EPIMERASE (GALACTOWALDENASE) (UDP-GALACTOSE 4-EPIMERASE) gi|10173723|dbj|BAB04827.1| (AP001510) UDP-glucose 4-epimerase [Bacillus halodurans], score 418, E-value 1.00E-116; Belongs to the NAD(P)-dependent epimerase/dehydratase family
 
 
 0.998
NagC3
Transcriptional regulator; Best Blastp hit = gi|10173709|dbj|BAB04813.1| (AP001510) transcriptional repressor of the xylose operon [Bacillus halodurans], score 270, E-value 2.00E-71
     
 0.953
TTE1925
Uncharacterized protein; Best Blastp hit = gi|5690009|emb|CAB51936.1| (AJ132472) hypothetical protein [Ruminococcus flavefaciens], score 166, E-value 3.00E-40
     
 0.938
GalU
UTP--glucose-1-phosphate uridylyltransferase; Best Blastp hit = gi|10176276|dbj|BAB07371.1| (AP001519) UTP-glucose-1-phosphate uridylyltransferase [Bacillus halodurans], score 366, E-value 1.00E-100
  
  
 0.926
GalT
Galactose-1-phosphate uridylyltransferase; Best Blastp hit = gi|7434860|pir||A72322 hypothetical protein TM0896 - Thermotoga maritima (strain MSB8) gi|4981431|gb|AAD35977.1|AE001754_14 '(AE001754) galactose-1-phosphate uridylyltransferase, putative [Thermotoga maritima]', score 260, E-value 2.00E-68
     
 0.820
ManA
Phosphomannose isomerase; Best Blastp hit = gi|13249157|gb|AAK16707.1| (AF324506) mannose-6-phosphate isomerase [Bacillus subtilis], score 211, E-value 8.00E-54
  
   
 0.733
LytS2
Histidine kinase; Best Blastp hit = gi|10176070|dbj|BAB07166.1| (AP001518) two-component sensor histidine kinase [Bacillus halodurans], score 236, E-value 6.00E-61
 
   
 0.596
SpoVS
Uncharacterized protein; Best Blastp hit = gi|10174995|dbj|BAB06094.1| (AP001515) stage V sporulation protein S [Bacillus halodurans], score 127, E-value 2.00E-29
      
 0.593
LytS
Histidine kinase; Best Blastp hit = gi|10176466|dbj|BAB07560.1| (AP001520) two-component sensor histidine kinase [Bacillus halodurans], score 264, E-value 2.00E-69
 
   
 0.578
Your Current Organism:
Caldanaerobacter subterraneus
NCBI taxonomy Id: 273068
Other names: C. subterraneus subsp. tengcongensis MB4, Caldanaerobacter subterraneus, Caldanaerobacter subterraneus subsp. tengcongensis MB4, Thermoanaerobacter tengcongensis MB4, Thermoanaerobacter tengcongensis str. MB4, Thermoanaerobacter tengcongensis strain MB4
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