STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PurR8Transcriptional regulator; Best Blastp hit = gi|10174933|dbj|BAB06032.1| (AP001515) transcriptional regulator [Bacillus halodurans], score 282, E-value 4.00E-75. (331 aa)    
Predicted Functional Partners:
IolE
Sugar phosphate isomerases/epimerases; Best Blastp hit = gi|13471795|ref|NP_103362.1| hypothetical protein [Mesorhizobium loti] gi|14022539|dbj|BAB49148.1| (AP002998) hypothetical protein [Mesorhizobium loti], score 205, E-value 7.00E-52.
  
    0.665
IolE2
Sugar phosphate isomerases/epimerases; Best Blastp hit = gi|10175969|dbj|BAB07065.1| (AP001518) BH3346; unknown conserved protein in others [Bacillus halodurans], score 146, E-value 3.00E-34.
  
    0.665
MviM3
Predicted dehydrogenases and related proteins; Best Blastp hit = gi|10174784|dbj|BAB05884.1| (AP001514) BH2165; unknown conserved protein [Bacillus halodurans], score 236, E-value 3.00E-61.
     
 0.650
MviM4
Predicted dehydrogenases and related proteins; Best Blastp hit = gi|2745845|gb|AAC23913.1| (AF039207) NADH-dependent dehydrogenase homolog [Listeria monocytogenes], score 537, E-value 1.00E-152.
     
 0.650
FruB
Phosphotransferase system, HPr-related proteins; Best Blastp hit = gi|10176190|dbj|BAB07285.1| (AP001519) phosphocarrier protein HPr (catabolite repression) [Bacillus halodurans], score 103, E-value 4.00E-22.
   
 
 0.617
PykF
Pyruvate kinase; Best Blastp hit = gi|10175785|dbj|BAB06882.1| (AP001517) pyruvate kinase [Bacillus halodurans], score 674, E-value 0; Belongs to the pyruvate kinase family.
    
 
 0.528
LdhA2
Lactate dehydrogenase and related dehydrogenases; Best Blastp hit = gi|13516509|dbj|BAB40320.1| (AB033995) glyoxylate reductase [Thermococcus litoralis], score 356, E-value 3.00E-97; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
  
    0.501
TTE1947
Predicted permease; Best Blastp hit = gi|7363467|gb|AAF61312.1| (AF132735) malate permease [Clostridium cellulovorans], score 149, E-value 5.00E-35.
       0.488
TTE1953
Hypothetical protein.
       0.486
AtoC2
AAA superfamily ATPases with N-terminal receiver domain; Best Blastp hit = gi|10176524|dbj|BAB07618.1| (AP001520) transcriptional regulator [Bacillus halodurans], score 311, E-value 1.00E-83.
   
 
 0.476
Your Current Organism:
Caldanaerobacter subterraneus
NCBI taxonomy Id: 273068
Other names: C. subterraneus subsp. tengcongensis MB4, Caldanaerobacter subterraneus subsp. tengcongensis MB4, Thermoanaerobacter tengcongensis MB4, Thermoanaerobacter tengcongensis str. MB4, Thermoanaerobacter tengcongensis strain MB4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.