STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FtsXCell division protein; Part of the ABC transporter FtsEX involved in asymmetric cellular division facilitating the initiation of sporulation. Belongs to the ABC-4 integral membrane protein family. FtsX subfamily. (295 aa)    
Predicted Functional Partners:
FtsE
Predicted ATPase involved in cell division; Part of the ABC transporter FtsEX involved in cellular division.
 
 0.998
NlpD4
Membrane proteins related to metalloendopeptidases; Best Blastp hit = gi|11350176|pir||E83093 hypothetical protein PA4404 [imported] - Pseudomonas aeruginosa (strain PAO1) gi|6715619|gb|AAF26458.1| (U19797) hypothetical protein [Pseudomonas aeruginosa] gi|9950636|gb|AAG07792.1|AE004856_3 (AE004856) hypothetical protein [Pseudomonas aeruginosa], score 123, E-value 5.00E-27.
 
 
 
 0.985
SrmR2
Regulator of polyketide synthase expression; Best Blastp hit = gi|7959057|dbj|BAA95938.1| (AB035092) Orf6 [Clostridium perfringens], score 74.3, E-value 2.00E-12.
       0.842
TTE0927
Hypothetical protein.
   
 
 0.784
Prc
Periplasmic protease; Best Blastp hit = gi|11351142|pir||B83005 probable carboxyl-terminal proteinase PA5134 [imported] - Pseudomonas aeruginosa (strain PAO1) gi|9951433|gb|AAG08519.1|AE004926_9 (AE004926) probable carboxyl-terminal protease [Pseudomonas aeruginosa], score 251, E-value 9.00E-66; Belongs to the peptidase S41A family.
 
     0.769
DegQ
Trypsin-like serine protease, typically periplasmic, contain C-terminal PDZ domain; Best Blastp hit = gi|4104598|gb|AAD10260.1| (AF036965) unknown [Lactobacillus sakei], score 100, E-value 4.00E-20.
  
  
 0.763
MalK
ABC-type sugar/spermidine/putrescine/iron/thiamine transport systems, ATPase component; Best Blastp hit = gi|7959056|dbj|BAA95937.1| (AB035092) Orf5 [Clostridium perfringens], score 499, E-value 1.00E-140; Belongs to the ABC transporter superfamily.
    
 0.675
UvrA
Excinuclease ATPase subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.
     
 0.637
UvrB
Helicase subunit of the DNA excision repair complex; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the [...]
       0.632
FtsW3
Best Blastp hit = gi|2493589|sp|P71587|FTSW_MYCTU PROBABLE CELL DIVISION PROTEIN FTSW gi|7478925|pir||G70699 probable rodA protein - Mycobacterium tuberculosis (strain H37RV) gi|1552572|emb|CAB02437.1| (Z80233) rodA [Mycobacterium tuberculosis] gi|13879061|gb|AAK44242.1| (AE006916) cell division protein FtsW [Mycobacterium tuberculosis CDC1551], score 216, E-value 4.00E-55; Belongs to the SEDS family.
  
  
 0.610
Your Current Organism:
Caldanaerobacter subterraneus
NCBI taxonomy Id: 273068
Other names: C. subterraneus subsp. tengcongensis MB4, Caldanaerobacter subterraneus subsp. tengcongensis MB4, Thermoanaerobacter tengcongensis MB4, Thermoanaerobacter tengcongensis str. MB4, Thermoanaerobacter tengcongensis strain MB4
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