STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TTE2095Transposase; Best Blastp hit = gi|4323609|gb|AAD16446.1| (AF101410) transposase [Mycoplasma mycoides subsp. mycoides SC] gi|4323611|gb|AAD16447.1| (AF101411) transposase [Mycoplasma mycoides subsp. mycoides SC] gi|4323613|gb|AAD16448.1| (AF101412) transposase [Mycoplasma mycoides subsp. mycoides SC], score 190, E-value 5.00E-47. (565 aa)    
Predicted Functional Partners:
NlpD5
Membrane proteins related to metalloendopeptidases; Best Blastp hit = gi|11352983|pir||A81790 conserved hypothetical protein NMA2172 [imported] - Neisseria meningitidis (group A strain Z2491) gi|7380793|emb|CAB85384.1| '(AL162758) conserved hypothetical protein, possible peptidase [Neisseria meningitidis Z2491]', score 122, E-value 1.00E-26.
       0.477
TTE2094
Hypothetical protein.
       0.477
TTE1957
Predicted nucleotidyltransferases; Best Blastp hit = gi|13814886|gb|AAK41854.1| (AE006778) Conserved hypothetical protein [Sulfolobus solfataricus], score 53.1, E-value 1.00E-06.
  
     0.471
TTE1104
Transposase; Best Blastp hit = gi|7479040|pir||F70678 probable transposase for IS1558 - Mycobacterium tuberculosis (strain H37RV) gi|1666161|emb|CAB03772.1| (Z81451) hypothetical protein Rv2424c [Mycobacterium tuberculosis], score 214, E-value 2.00E-54.
  
     0.405
Your Current Organism:
Caldanaerobacter subterraneus
NCBI taxonomy Id: 273068
Other names: C. subterraneus subsp. tengcongensis MB4, Caldanaerobacter subterraneus subsp. tengcongensis MB4, Thermoanaerobacter tengcongensis MB4, Thermoanaerobacter tengcongensis str. MB4, Thermoanaerobacter tengcongensis strain MB4
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.