STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CbiO3ABC-type cobalt transport system, ATPase component; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. (286 aa)    
Predicted Functional Partners:
CbiQ3
ABC-type cobalt transport system, permease component CbiQ and related transporters; Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 0.999
CbiQ2
ABC-type cobalt transport system, permease component CbiQ and related transporters; Best Blastp hit = gi|7518348|pir||F75200 hypothetical protein PAB2261 - Pyrococcus abyssi (strain Orsay) gi|5457562|emb|CAB49053.1| (AJ248283) hypothetical protein [Pyrococcus abyssi], score 110, E-value 2.00E-23.
 
 0.990
CbiO4
ABC-type cobalt transport system, ATPase component; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
  
 
0.972
BioY
Uncharacterized ACR; Best Blastp hit = gi|7474464|pir||B69832 biotin biosynthesis homolog yhfU - Bacillus subtilis gi|2226257|emb|CAA74544.1| (Y14084) hypothetical protein [Bacillus subtilis] gi|2633373|emb|CAB12877.1| (Z99109) similar to biotin biosynthesis [Bacillus subtilis], score 135, E-value 4.00E-31.
 
 
 0.969
TruA
Pseudouridylate synthase (tRNA psi55); Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
  
 0.916
MdlB7
ABC-type multidrug/protein/lipid transport system, ATPase component; Best Blastp hit = gi|6759559|emb|CAB69752.1| (AL137187) putative ABC transporter [Streptomyces coelicolor], score 518, E-value 1.00E-145.
 
     
0.899
MdlB6
ABC-type multidrug/protein/lipid transport system, ATPase component; Best Blastp hit = gi|11346298|pir||C81352 lipid export ABC transport protein Cj0803 [imported] - Campylobacter jejuni (strain NCTC 11168) gi|6968249|emb|CAB73068.1| (AL139076) lipid export ABC transport protein [Campylobacter jejuni], score 196, E-value 5.00E-49.
 
    
0.887
MdlB12
ABC-type multidrug/protein/lipid transport system, ATPase component; Best Blastp hit = gi|7445648|pir||B71182 probable ABC transporter ATP-binding protein - Pyrococcus horikoshii gi|3258166|dbj|BAA30849.1| (AP000007) 582aa long hypothetical ABC transporter ATP-binding protein [Pyrococcus horikoshii], score 258, E-value 1.00E-67.
 
    
0.881
DppC4
ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; Best Blastp hit = gi|6166161|sp|P26904|DPPC_BACSU DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPC gi|98273|pir||S16649 dipeptide ABC transporter (permease) - Bacillus subtilis gi|2632015|emb|CAA05574.1| (AJ002571) DppC [Bacillus subtilis] gi|2633648|emb|CAB13151.1| (Z99110) dipeptide ABC transporter (permease) [Bacillus subtilis], score 320, E-value 1.00E-86.
 
      0.880
MdlB11
ABC-type multidrug/protein/lipid transport system, ATPase component; Best Blastp hit = gi|11346298|pir||C81352 lipid export ABC transport protein Cj0803 [imported] - Campylobacter jejuni (strain NCTC 11168) gi|6968249|emb|CAB73068.1| (AL139076) lipid export ABC transport protein [Campylobacter jejuni], score 196, E-value 5.00E-49.
 
    
0.872
Your Current Organism:
Caldanaerobacter subterraneus
NCBI taxonomy Id: 273068
Other names: C. subterraneus subsp. tengcongensis MB4, Caldanaerobacter subterraneus subsp. tengcongensis MB4, Thermoanaerobacter tengcongensis MB4, Thermoanaerobacter tengcongensis str. MB4, Thermoanaerobacter tengcongensis strain MB4
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