STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MdlB10ABC-type multidrug/protein/lipid transport system, ATPase component; Best Blastp hit = gi|10173327|dbj|BAB04432.1| (AP001509) ABC transporter (ATP-binding protein) [Bacillus halodurans], score 183, E-value 4.00E-45. (553 aa)    
Predicted Functional Partners:
CcmA10
ABC-type multidrug transport system, ATPase component; Best Blastp hit = gi|13814525|gb|AAK41557.1| '(AE006746) Antibiotic ABC transporter, ATP binding protein [Sulfolobus solfataricus]', score 102, E-value 6.00E-21.
  
  0.753
CcmA4
ABC-type multidrug transport system, ATPase component; Best Blastp hit = gi|7445584|pir||C72568 probable ATP-binding transport protein APE1829 - Aeropyrum pernix (strain K1) gi|5105519|dbj|BAA80832.1| (AP000062) 345aa long hypothetical ATP-binding transport protein [Aeropyrum pernix], score 130, E-value 2.00E-29.
  
  0.743
CcmA16
ABC-type multidrug transport system, ATPase component; Best Blastp hit = gi|7445600|pir||S77512 ABC-type transport protein slr1901 - Synechocystis sp. (strain PCC 6803) gi|1652437|dbj|BAA17359.1| (D90905) ABC transporter [Synechocystis sp.], score 219, E-value 5.00E-56.
 
   
 0.727
OppF6
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Best Blastp hit = gi|1168476|sp|P42065|APPF_BACSU OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPF gi|2119774|pir||I40544 oligopeptide transport ATP-binding protein appF - Bacillus subtilis gi|677944|gb|AAA62357.1| (U20909) AppF [Bacillus subtilis] gi|2633491|emb|CAB12994.1| (Z99110) oligopeptide ABC transporter (ATP-binding protein) [Bacillus subtilis], score 404, E-value 1.00E-112; Belongs to the ABC transporter superfamily.
 
     
0.724
TTE2734
Conserved hypothetical protein; Best Blastp hit = gi|13621736|gb|AAK33519.1| (AE006509) conserved hypothetical protein [Streptococcus pyogenes], score 69.7, E-value 4.00E-11.
       0.639
TTE2735
ABC-type multidrug transport system, permease component; Best Blastp hit = gi|13621735|gb|AAK33518.1| (AE006509) conserved hypothetical protein [Streptococcus pyogenes], score 101, E-value 1.00E-20.
       0.639
DnaK
Molecular chaperone; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.611
ThrS
Threonyl-tRNA synthetase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr). Also edits incorrectly charged L-seryl-tRNA(Thr).
  
   0.590
HflB2
ATP-dependent Zn proteases; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.
 
   
 0.523
FepC
ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components; Best Blastp hit = gi|10174204|dbj|BAB05306.1| (AP001512) iron(III) dicitrate transport system (permease) [Bacillus halodurans], score 196, E-value 2.00E-49.
 
  
0.465
Your Current Organism:
Caldanaerobacter subterraneus
NCBI taxonomy Id: 273068
Other names: C. subterraneus subsp. tengcongensis MB4, Caldanaerobacter subterraneus subsp. tengcongensis MB4, Thermoanaerobacter tengcongensis MB4, Thermoanaerobacter tengcongensis str. MB4, Thermoanaerobacter tengcongensis strain MB4
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