STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MdlB11ABC-type multidrug/protein/lipid transport system, ATPase component; Best Blastp hit = gi|11346298|pir||C81352 lipid export ABC transport protein Cj0803 [imported] - Campylobacter jejuni (strain NCTC 11168) gi|6968249|emb|CAB73068.1| (AL139076) lipid export ABC transport protein [Campylobacter jejuni], score 196, E-value 5.00E-49. (549 aa)    
Predicted Functional Partners:
CbiO3
ABC-type cobalt transport system, ATPase component; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
    
0.872
OppF6
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Best Blastp hit = gi|1168476|sp|P42065|APPF_BACSU OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPF gi|2119774|pir||I40544 oligopeptide transport ATP-binding protein appF - Bacillus subtilis gi|677944|gb|AAA62357.1| (U20909) AppF [Bacillus subtilis] gi|2633491|emb|CAB12994.1| (Z99110) oligopeptide ABC transporter (ATP-binding protein) [Bacillus subtilis], score 404, E-value 1.00E-112; Belongs to the ABC transporter superfamily.
 
     
0.740
MdlB4
ABC-type multidrug/protein/lipid transport system, ATPase component; Best Blastp hit = gi|7445872|pir||F72268 'ABC transporter, ATP-binding protein - Thermotoga maritima (strain MSB8)' gi|4981878|gb|AAD36392.1|AE001786_5 '(AE001786) ABC transporter, ATP-binding protein [Thermotoga maritima]', score 249, E-value 5.00E-65.
 
    
0.631
CcmA10
ABC-type multidrug transport system, ATPase component; Best Blastp hit = gi|13814525|gb|AAK41557.1| '(AE006746) Antibiotic ABC transporter, ATP binding protein [Sulfolobus solfataricus]', score 102, E-value 6.00E-21.
  
  0.615
CcmA4
ABC-type multidrug transport system, ATPase component; Best Blastp hit = gi|7445584|pir||C72568 probable ATP-binding transport protein APE1829 - Aeropyrum pernix (strain K1) gi|5105519|dbj|BAA80832.1| (AP000062) 345aa long hypothetical ATP-binding transport protein [Aeropyrum pernix], score 130, E-value 2.00E-29.
  
  0.530
AslB2
Arylsulfatase regulator (Fe-S oxidoreductase); Best Blastp hit = gi|7462068|pir||H72266 astB/chuR-related protein - Thermotoga maritima (strain MSB8) gi|4981883|gb|AAD36396.1|AE001787_1 (AE001787) astB/chuR-related protein [Thermotoga maritima], score 238, E-value 2.00E-61.
  
     0.500
DnaK
Molecular chaperone; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.492
AslB4
Arylsulfatase regulator (Fe-S oxidoreductase); Best Blastp hit = gi|7462068|pir||H72266 astB/chuR-related protein - Thermotoga maritima (strain MSB8) gi|4981883|gb|AAD36396.1|AE001787_1 (AE001787) astB/chuR-related protein [Thermotoga maritima], score 244, E-value 1.00E-63.
  
     0.480
PhnL2
ABC-type transport systems, involved in lipoprotein release, ATPase components; Best Blastp hit = gi|9910975|sp|Q9WYI7|Y352_THEMA HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN TM0352 gi|7445989|pir||H72385 'ABC transporter, ATP-binding protein - Thermotoga maritima (strain MSB8)' gi|4980855|gb|AAD35439.1|AE001716_2 '(AE001716) ABC transporter, ATP-binding protein [Thermotoga maritima]', score 256, E-value 2.00E-67.
    
0.460
SpoVK
ATPases of the AAA+ class; Best Blastp hit = gi|98485|pir||S16301 spore formation protein spoVK - Bacillus subtilis gi|40197|emb|CAA42049.1| (X59412) spoVJ [Bacillus subtilis], score 282, E-value 4.00E-75.
   
 0.439
Your Current Organism:
Caldanaerobacter subterraneus
NCBI taxonomy Id: 273068
Other names: C. subterraneus subsp. tengcongensis MB4, Caldanaerobacter subterraneus subsp. tengcongensis MB4, Thermoanaerobacter tengcongensis MB4, Thermoanaerobacter tengcongensis str. MB4, Thermoanaerobacter tengcongensis strain MB4
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