Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Ta0214 | Ta0506 | gene:9571430 | gene:9571724 | Conserved hypothetical protein; Could be responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs; Belongs to the pseudouridine synthase TruD family. | Thiazole biosynthesis protein Thi I related protein; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. | 0.498 |
| Ta0214 | Ta0932 | gene:9571430 | gene:9572149 | Conserved hypothetical protein; Could be responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs; Belongs to the pseudouridine synthase TruD family. | tRNA-pseudouridine synthase I related protein; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs; Belongs to the tRNA pseudouridine synthase TruA family. | 0.676 |
| Ta0214 | Ta1119 | gene:9571430 | gene:9572341 | Conserved hypothetical protein; Could be responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs; Belongs to the pseudouridine synthase TruD family. | Strong similarity to unknown protein: hypothetical protein PAB2029 - Pyrococcus abyssi (strain Orsay); PIR:H75166. | 0.690 |
| Ta0214 | Ta1244 | gene:9571430 | gene:9572467 | Conserved hypothetical protein; Could be responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs; Belongs to the pseudouridine synthase TruD family. | Dyskerin (nucleolar protein Nap57) related protein; Could be responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 2 subfamily. | 0.595 |
| Ta0214 | Ta1311 | gene:9571430 | gene:9572534 | Conserved hypothetical protein; Could be responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs; Belongs to the pseudouridine synthase TruD family. | Probable Histone and other Protein Acetyltransferase (yeast HPA1); Strong similarity to known protein: histone acetyltransferase (EC 2.3.1.48), RNA polymerase II-associated [validated] - yeast (Saccharomyces cerevisiae); PIR2:S61980. | 0.529 |
| Ta0214 | Ta1365 | gene:9571430 | gene:9572592 | Conserved hypothetical protein; Could be responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs; Belongs to the pseudouridine synthase TruD family. | Conserved hypothetical protein; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit. | 0.508 |
| Ta0256 | Ta0506 | gene:9571473 | gene:9571724 | Hypothetical protein. | Thiazole biosynthesis protein Thi I related protein; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. | 0.789 |
| Ta0256 | Ta0932 | gene:9571473 | gene:9572149 | Hypothetical protein. | tRNA-pseudouridine synthase I related protein; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs; Belongs to the tRNA pseudouridine synthase TruA family. | 0.439 |
| Ta0256 | Ta1119 | gene:9571473 | gene:9572341 | Hypothetical protein. | Strong similarity to unknown protein: hypothetical protein PAB2029 - Pyrococcus abyssi (strain Orsay); PIR:H75166. | 0.627 |
| Ta0256 | Ta1244 | gene:9571473 | gene:9572467 | Hypothetical protein. | Dyskerin (nucleolar protein Nap57) related protein; Could be responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 2 subfamily. | 0.553 |
| Ta0506 | Ta0214 | gene:9571724 | gene:9571430 | Thiazole biosynthesis protein Thi I related protein; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. | Conserved hypothetical protein; Could be responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs; Belongs to the pseudouridine synthase TruD family. | 0.498 |
| Ta0506 | Ta0256 | gene:9571724 | gene:9571473 | Thiazole biosynthesis protein Thi I related protein; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. | Hypothetical protein. | 0.789 |
| Ta0506 | Ta0844 | gene:9571724 | gene:9572058 | Thiazole biosynthesis protein Thi I related protein; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. | Similarity to known protein: molybdopterin biosynthesis protein moeB - Escherichia coli; PIR:B32352. | 0.925 |
| Ta0506 | Ta0932 | gene:9571724 | gene:9572149 | Thiazole biosynthesis protein Thi I related protein; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. | tRNA-pseudouridine synthase I related protein; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs; Belongs to the tRNA pseudouridine synthase TruA family. | 0.848 |
| Ta0506 | Ta1119 | gene:9571724 | gene:9572341 | Thiazole biosynthesis protein Thi I related protein; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. | Strong similarity to unknown protein: hypothetical protein PAB2029 - Pyrococcus abyssi (strain Orsay); PIR:H75166. | 0.760 |
| Ta0506 | Ta1244 | gene:9571724 | gene:9572467 | Thiazole biosynthesis protein Thi I related protein; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. | Dyskerin (nucleolar protein Nap57) related protein; Could be responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 2 subfamily. | 0.644 |
| Ta0844 | Ta0506 | gene:9572058 | gene:9571724 | Similarity to known protein: molybdopterin biosynthesis protein moeB - Escherichia coli; PIR:B32352. | Thiazole biosynthesis protein Thi I related protein; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. | 0.925 |
| Ta0844 | Ta1119 | gene:9572058 | gene:9572341 | Similarity to known protein: molybdopterin biosynthesis protein moeB - Escherichia coli; PIR:B32352. | Strong similarity to unknown protein: hypothetical protein PAB2029 - Pyrococcus abyssi (strain Orsay); PIR:H75166. | 0.670 |
| Ta0844 | Ta1311 | gene:9572058 | gene:9572534 | Similarity to known protein: molybdopterin biosynthesis protein moeB - Escherichia coli; PIR:B32352. | Probable Histone and other Protein Acetyltransferase (yeast HPA1); Strong similarity to known protein: histone acetyltransferase (EC 2.3.1.48), RNA polymerase II-associated [validated] - yeast (Saccharomyces cerevisiae); PIR2:S61980. | 0.448 |
| Ta0844 | Ta1442 | gene:9572058 | gene:9572671 | Similarity to known protein: molybdopterin biosynthesis protein moeB - Escherichia coli; PIR:B32352. | Hypothetical protein. | 0.955 |
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