A0A0H2S2W2 protein (Schizopora paradoxa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0H2S2W2

Git3 domain-containing protein. (553 aa)

Predicted Functional Partners:

A0A0H2S298

0.866

A0A0H2RF04

0.855

A0A0H2SAM9

0.854

A0A0H2RKW9

0.851

A0A0H2S2Q1

0.849

A0A0H2RVS3

0.848

A0A0H2R412

0.846

A0A0H2SLI0

0.846

A0A0H2RMZ5

0.844

A0A0H2RYY6

0.844

Your Current Organism:

Schizopora paradoxa

NCBI taxonomy Id: 27342
Other names: Hyphodontia paradoxa, S. paradoxa

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0H2R412	A0A0H2S2W2	Kinase-like protein.	Git3 domain-containing protein.	0.846
A0A0H2RF04	A0A0H2RKW9	WD40 repeat-like protein.	Uncharacterized protein.	0.995
A0A0H2RF04	A0A0H2S2W2	WD40 repeat-like protein.	Git3 domain-containing protein.	0.855
A0A0H2RF04	A0A0H2SAM9	WD40 repeat-like protein.	B30.2/SPRY domain-containing protein.	0.999
A0A0H2RKW9	A0A0H2RF04	Uncharacterized protein.	WD40 repeat-like protein.	0.995
A0A0H2RKW9	A0A0H2S2W2	Uncharacterized protein.	Git3 domain-containing protein.	0.851
A0A0H2RKW9	A0A0H2SAM9	Uncharacterized protein.	B30.2/SPRY domain-containing protein.	0.995
A0A0H2RMZ5	A0A0H2RYY6	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.796
A0A0H2RMZ5	A0A0H2S2W2	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	Git3 domain-containing protein.	0.844
A0A0H2RVS3	A0A0H2S298	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A0H2RVS3	A0A0H2S2Q1	Uncharacterized protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.999
A0A0H2RVS3	A0A0H2S2W2	Uncharacterized protein.	Git3 domain-containing protein.	0.848
A0A0H2RVS3	A0A0H2SLI0	Uncharacterized protein.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.999
A0A0H2RYY6	A0A0H2RMZ5	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	0.796
A0A0H2RYY6	A0A0H2S2W2	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Git3 domain-containing protein.	0.844
A0A0H2S298	A0A0H2RVS3	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A0H2S298	A0A0H2S2Q1	Uncharacterized protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.999
A0A0H2S298	A0A0H2S2W2	Uncharacterized protein.	Git3 domain-containing protein.	0.866
A0A0H2S298	A0A0H2SLI0	Uncharacterized protein.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.999
A0A0H2S2Q1	A0A0H2RVS3	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Uncharacterized protein.	0.999