STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_956g5Uncharacterized protein. (292 aa)    
Predicted Functional Partners:
VP01_201g5
Uncharacterized protein.
    
 0.719
VP01_738g2
Nuclear transcription factor Y, beta.
    
 
 0.696
VP01_865g2
Uncharacterized protein.
    
 0.688
VP01_476g1
Uncharacterized protein.
    
 0.670
VP01_2179g1
Uncharacterized protein.
    
 0.668
VP01_436g8
Importin subunit alpha; Belongs to the importin alpha family.
    
 
 0.665
VP01_105g12
BHLH domain-containing protein.
   
 0.650
VP01_417g5
MADS-box domain-containing protein.
    
 0.648
VP01_335g17
Uncharacterized protein.
    
 0.648
VP01_233g10
PAS domain-containing protein.
    
 0.648
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.