STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_8429g1Uncharacterized protein. (207 aa)    
Predicted Functional Partners:
VP01_2906g1
RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.
    
 0.672
VP01_202g3
Uncharacterized protein; Belongs to the actin family.
    
 0.653
VP01_311g7
Uncharacterized protein.
    
 0.648
pcn
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
   
 0.638
VP01_2480g8
DNA-directed RNA polymerase II subunit F.
    
 0.637
Cdc2
Cyclin-dependent kinase 2; Belongs to the protein kinase superfamily.
    
 0.619
VP01_292g7
CMGC/CDK/CDK5 protein kinase; Belongs to the protein kinase superfamily.
    
 0.619
VP01_887g15
YL1_C domain-containing protein.
    
 0.592
VP01_40g4
WAC domain-containing protein.
   
 0.589
VP01_415g5
Uncharacterized protein; Belongs to the actin family.
   
 0.588
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.