STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_798g3Uncharacterized protein. (416 aa)    
Predicted Functional Partners:
VP01_646g5
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
 
 
 0.990
VP01_1901g3
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
 
 
 0.959
VP01_1064g6
Uncharacterized protein.
   
 
 0.954
VP01_865g2
Uncharacterized protein.
    
 0.927
VP01_541g2
Uncharacterized protein.
   
 0.866
VP01_130g15
Metallophos domain-containing protein.
   
 0.866
VP01_2251g2
Small nuclear ribonucleoprotein Sm D3.
    
 0.854
VP01_684g7
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
    
 0.853
VP01_3287g3
Small nuclear ribonucleoprotein Sm D2.
    
 0.844
VP01_478g5
Rab GTPase.
    
 0.833
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.