STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_7851g3Uncharacterized protein. (177 aa)    
Predicted Functional Partners:
VP01_2134g3
Uncharacterized protein.
   
   0.574
VP01_2311g1
HECT domain-containing protein.
   
 
 0.558
VP01_1528g6
Uncharacterized protein.
   
 
 0.558
VP01_4g16
Uncharacterized protein.
   
  0.474
VP01_2244g1
Uncharacterized protein.
   
  0.474
VP01_1373g8
AN1-type domain-containing protein.
   
  0.464
VP01_3134g3
Large subunit ribosomal protein L40e.
    
  0.431
VP01_182g4
Uncharacterized protein.
    
  0.431
VP01_72g6
CIA30 domain-containing protein.
   
  0.415
VP01_1310g5
Ubiquitin-40S ribosomal protein S27a-2.
   
  0.415
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.