STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_6804g1Uncharacterized protein. (187 aa)    
Predicted Functional Partners:
VP01_4514g1
Uncharacterized protein.
    
 0.624
VP01_221g3
Slu7 domain-containing protein.
   
 0.624
VP01_13g5
Adenosinetriphosphatase.
   
 0.624
VP01_675g13
MI domain-containing protein.
   
 0.622
VP01_773g9
Cir_N domain-containing protein.
    
 0.619
VP01_775g3
Uncharacterized protein.
    
 0.618
VP01_807g16
Uncharacterized protein.
    
  0.609
VP01_770g2
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
  0.596
VP01_721g4
Adenosinetriphosphatase.
   
 0.590
VP01_222g5
Uncharacterized protein.
   
 0.582
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.