STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_656g4Putative signal peptide protein. (186 aa)    
Predicted Functional Partners:
VP01_3044g5
Uncharacterized protein.
    
 0.751
VP01_801g9
DNA polymerase.
    
 0.631
VP01_668g5
DNA polymerase.
    
 0.631
VP01_3287g3
Small nuclear ribonucleoprotein Sm D2.
    
 0.628
VP01_684g7
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.582
VP01_5902g1
Uncharacterized protein.
    
   0.558
VP01_1662g1
NADH dehydrogenase (Ubiquinone) 1 alpha subcomplex 8.
   
   0.558
VP01_2491g4
Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.
   
   0.557
VP01_4083g1
Small nuclear ribonucleoprotein G.
    
  0.556
VP01_2650g4
NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial; Belongs to the complex I 49 kDa subunit family.
   
   0.554
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.