STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_6519g1ATP synthase subunit alpha. (208 aa)    
Predicted Functional Partners:
atpG
ATP synthase subunit gamma.
 
 0.995
atpD
ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.
 
 0.993
atpH
ATP synthase F1, delta subunit.
  
 0.991
atpC
ATP synthase F1, epsilon subunit.
  
 0.991
VP01_3431g2
Uncharacterized protein.
   
 0.989
VP01_3336g2
ATP synthase subunit d, mitochondrial; Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the cent [...]
   
 0.985
VP01_59g8
Uncharacterized protein.
  
 0.979
VP01_2322g3
Uncharacterized protein.
   
 0.964
VP01_3123g3
Uncharacterized protein.
   
 0.958
VP01_1400g7
Uncharacterized protein.
   
 0.954
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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