STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_639g7TPR_REGION domain-containing protein. (1377 aa)    
Predicted Functional Partners:
VP01_374g9
Glucose repression regulatory protein TUP1.
    
 0.904
VP01_1734g2
BZIP domain-containing protein.
    
 0.888
VP01_344g14
60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.
 
 
   0.878
VP01_534g4
Uncharacterized protein.
    
 0.877
VP01_534g3
Uncharacterized protein.
    
 0.877
VP01_3611g1
Uncharacterized protein.
    
 0.873
VP01_3611g2
WD_REPEATS_REGION domain-containing protein.
    
 0.873
VP01_2004g3
ANK_REP_REGION domain-containing protein.
    
 0.861
VP01_1495g2
WD_REPEATS_REGION domain-containing protein.
    
 0.834
VP01_4315g2
CDC73_C domain-containing protein.
    
 0.818
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.