STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_629g6Uncharacterized protein. (514 aa)    
Predicted Functional Partners:
VP01_7g30
CAP-Gly domain-containing protein.
   
 0.999
VP01_3091g1
Uncharacterized protein; Belongs to the actin family.
   
 0.993
VP01_404g1
Uncharacterized protein.
    
 0.992
VP01_807g8
Dynactin 5.
    
 0.989
VP01_1147g3
Dynein intermediate chain, cytosolic.
    
 0.986
VP01_200g4
Dynactin 4.
   
 0.982
VP01_1590g6
F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.
   
 0.979
VP01_1446g3
Uncharacterized protein.
   
 0.974
VP01_2752g5
Uncharacterized protein.
   
 0.954
VP01_647g2
Actin-2; Belongs to the actin family.
    
 0.948
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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