STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_62g12Proteasome endopeptidase complex. (288 aa)    
Predicted Functional Partners:
VP01_856g6
Proteasome subunit beta type.
   
 0.999
VP01_463g5
Proteasome subunit beta.
   
 0.999
VP01_450g4
Proteasome endopeptidase complex.
  
0.999
VP01_391g6
Proteasome subunit alpha type.
   
0.999
VP01_3340g1
VWFA domain-containing protein.
   
 0.999
VP01_3063g3
20S proteasome subunit beta 2.
   
 0.999
VP01_277g6
AAA domain-containing protein.
  
 0.999
VP01_2502g4
Proteasome endopeptidase complex; Belongs to the peptidase T1A family.
   
0.999
VP01_2410g1
26S protease regulatory subunit 7.
   
 0.999
VP01_2110g3
Proteasome subunit beta; Belongs to the peptidase T1B family.
   
 0.999
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.