STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_590g7YDG domain-containing protein. (686 aa)    
Predicted Functional Partners:
VP01_324g4
Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
   
 0.916
VP01_40g5
DNA ligase.
   
 
 0.750
pcn
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
   
   0.724
VP01_1878g2
Uncharacterized protein.
    
 0.679
VP01_7501g1
USP7_ICP0_bdg domain-containing protein.
    
 
 0.675
VP01_2415g1
Ubiquitin carboxyl-terminal hydrolase; Belongs to the peptidase C19 family.
    
 
 0.675
VP01_554g5
Uncharacterized protein.
    
 0.583
VP01_398g5
Uncharacterized protein.
    
 0.575
VP01_7406g1
Uncharacterized protein.
    
 0.573
VP01_3054g1
Pex24p domain-containing protein.
    
 0.573
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
Server load: low (24%) [HD]