STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_47g4JmjC domain-containing protein. (1161 aa)    
Predicted Functional Partners:
VP01_3097g1
Metallophos domain-containing protein.
    
 0.894
VP01_2837g2
Serine/threonine-protein phosphatase.
    
 0.894
VP01_857g2
Protein phosphatase PP2A regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family.
    
 0.787
VP01_35g11
SAM_MT_TRM5_TYW2 domain-containing protein.
  
  
 0.724
VP01_603g5
Serine/threonine-protein phosphatase.
    
 0.699
VP01_236g5
Serine/threonine-protein phosphatase.
    
 0.699
VP01_1672g4
Serine/threonine-protein phosphatase.
    
 0.655
VP01_646g5
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
    
 0.633
VP01_541g2
Uncharacterized protein.
    
 0.633
VP01_1901g3
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
    
 0.633
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.