STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_463g15t-SNARE coiled-coil homology domain-containing protein. (216 aa)    
Predicted Functional Partners:
VP01_2909g1
V-SNARE coiled-coil homology domain-containing protein.
   
 0.999
VP01_924g2
t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.
   
 0.998
VP01_797g1
Synaptobrevin YKT6; Belongs to the synaptobrevin family.
    
 0.997
VP01_966g8
Uncharacterized protein.
    
 0.996
VP01_1793g4
t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.
   
 0.994
VP01_310g10
Uncharacterized protein.
    
 0.991
VP01_892g7
Syntaxin 5; Belongs to the syntaxin family.
    
 
 0.988
VP01_745g11
t-SNARE coiled-coil homology domain-containing protein.
    
 0.987
VP01_5020g2
t-SNARE coiled-coil homology domain-containing protein.
    
 0.978
VP01_1688g5
Syntaxin-6_N domain-containing protein.
    
 0.978
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.