STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_423g3Uncharacterized protein. (923 aa)    
Predicted Functional Partners:
VP01_1813g2
GTP-binding protein ypt3.
    
  0.580
VP01_2304g3
Nudix hydrolase domain-containing protein.
    
  0.575
VP01_2125g4
CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase.
    
 0.575
rpsC
Ribosomal protein S3.
    
  0.552
VP01_436g8
Importin subunit alpha; Belongs to the importin alpha family.
    
 0.550
VP01_476g1
Uncharacterized protein.
    
 0.537
VP01_1640g3
Uncharacterized protein.
    
 0.527
VP01_529g1
Myotubularin phosphatase domain-containing protein.
    
  0.517
VP01_1292g6
CRIB domain-containing protein.
   
 0.514
VP01_1662g1
NADH dehydrogenase (Ubiquinone) 1 alpha subcomplex 8.
    
  0.500
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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