STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_415g5Uncharacterized protein; Belongs to the actin family. (434 aa)    
Predicted Functional Partners:
VP01_703g4
Actin-related protein 8; Probably involved in transcription regulation via its interaction with the INO80 complex, a chromatin remodeling complex. Belongs to the actin family.
    
 0.995
VP01_624g4
SWIB domain-containing protein.
   
 0.991
VP01_2906g1
RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.
   
 0.991
VP01_656g5
SANT_DAMP1_like domain-containing protein.
   
 0.990
VP01_1852g3
Uncharacterized protein.
    
 0.989
VP01_142g10
Uncharacterized protein.
   
 0.988
VP01_1598g8
Uncharacterized protein.
   
 0.987
VP01_453g23
RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.
   
 0.985
VP01_399g2
Uncharacterized protein.
    
 0.985
VP01_1732g3
Enhancer of polycomb-like protein.
    
 0.981
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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