STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_3517g4Uncharacterized protein. (94 aa)    
Predicted Functional Partners:
VP01_2002g2
tRNA modification GTPase TrmE.
  
 
 0.821
VP01_2033g2
TRUD domain-containing protein.
    
 
 0.811
rplQ
Ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.
   
   0.794
rplX
Ribosomal protein L24.
   
   0.782
rplC
50S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.
   
 
 0.781
VP01_2043g7
G domain-containing protein.
   
 
 0.778
VP01_43g1
Large subunit ribosomal protein L11.
   
 
 0.776
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 
 0.775
rplM-2
Ribosomal protein L13.
  
   0.766
rplO
Ribosomal protein L15.
   
   0.766
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.