STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_3337g2DNA damage-binding protein CMR1; DNA-binding protein that binds to both single- and double- stranded DNA. Binds preferentially to UV-damaged DNA. May be involved in DNA-metabolic processes. (566 aa)    
Predicted Functional Partners:
VP01_1679g8
CPSF_A domain-containing protein.
    
 0.989
VP01_902g2
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.958
VP01_448g4
Uncharacterized protein.
   
 0.943
VP01_744g3
RING-box protein 1.
    
 0.940
VP01_195g8
RPA_C domain-containing protein.
    
 0.936
VP01_718g2
Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.
    
 0.924
VP01_212g2
COP9 signalosome complex subunit 5.
    
 0.922
VP01_1073g10
PCI domain-containing protein.
    
 0.912
VP01_938g4
PCI domain-containing protein.
    
 0.909
VP01_3g11
PCI domain-containing protein.
    
 0.907
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.