STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_3160g2Uncharacterized protein. (124 aa)    
Predicted Functional Partners:
VP01_863g3
Uracil phosphoribosyltransferase.
    
 0.760
VP01_622g3
Uncharacterized protein.
    
 0.760
VP01_3042g5
Uncharacterized protein.
    
 0.704
VP01_218g18
L-lactate dehydrogenase (Cytochrome); Belongs to the cytochrome b5 family.
   
 
 0.501
VP01_285g3
Uncharacterized protein.
    
  0.481
VP01_3324g3
Uncharacterized protein.
   
 
 0.474
VP01_1207g7
Uncharacterized protein.
     
 0.472
VP01_202g2
CMGC/SRPK protein kinase.
     
 0.455
VP01_1768g2
CMGC/SRPK protein kinase.
     
 0.455
VP01_482g3
Uncharacterized protein.
    
 0.447
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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