STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_3274g1Uncharacterized protein. (310 aa)    
Predicted Functional Partners:
VP01_1714g2
Uncharacterized protein.
   
 0.952
VP01_15g14
ERCC4 domain-containing protein.
   
 0.950
VP01_705g1
DNA topoisomerase.
    
 0.923
VP01_588g11
Uncharacterized protein.
    
 0.923
VP01_3734g4
RMI1_N domain-containing protein.
    
 0.919
VP01_2222g3
DNA repair protein RAD51 homolog; Required both for recombination and for the repair of DNA damage caused by X-rays; Belongs to the RecA family. RAD51 subfamily.
   
 0.919
VP01_3682g3
Asparaginyl-tRNA synthetase.
   
 0.911
VP01_718g2
Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.
    
 0.910
VP01_1558g5
Uncharacterized protein.
    
 0.900
VP01_12g5
Uncharacterized protein.
   
 0.900
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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