STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_264g4CN hydrolase domain-containing protein. (366 aa)    
Predicted Functional Partners:
VP01_2061g5
4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 
 0.830
nadD
Nicotinamide-nucleotide adenylyltransferase; Belongs to the eukaryotic NMN adenylyltransferase family.
  
 
 0.796
nadC
Nicotinate-nucleotide diphosphorylase (Carboxylating).
  
 
 0.788
VP01_153g7
Alanine transaminase.
  
 
 0.786
VP01_588g10
Allantoinase.
  
 
 0.767
VP01_588g6
Amidohydro-rel domain-containing protein.
  
 
 0.767
VP01_2189g6
Aminotran_5 domain-containing protein.
  
 
 0.759
VP01_84g7
Aminotransferase.
  
 
 0.751
VP01_487g1
Branched-chain-amino-acid aminotransferase.
  
 0.751
VP01_3546g1
Uncharacterized protein.
  
 
 0.751
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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