STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_2382g1Smg4_UPF3 domain-containing protein. (486 aa)    
Predicted Functional Partners:
VP01_1064g4
Uncharacterized protein.
   
 0.999
VP01_3875g1
RRM domain-containing protein.
    
 0.998
VP01_2691g3
Uncharacterized protein.
    
 0.998
VP01_2444g2
PWI domain-containing protein.
    
 0.997
VP01_1275g2
PINc domain-containing protein.
   
 0.995
VP01_329g2
Protein mago nashi.
    
 0.988
VP01_1972g2
ATP-dependent RNA helicase uap56.
    
 0.984
VP01_1692g3
Uncharacterized protein; Belongs to the DEAD box helicase family.
   
 0.983
VP01_675g13
MI domain-containing protein.
     
 0.982
VP01_84g12
RRM domain-containing protein.
    
 0.979
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.